Strain Fitness in Shewanella loihica PV-4 around Shew_0448

Experiment: Motility M3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0447 and Shew_0448 overlap by 17 nucleotidesShew_0448 and Shew_0449 are separated by 60 nucleotides Shew_0447: Shew_0447 - hypothetical protein (RefSeq), at 497,998 to 499,203 _0447 Shew_0448: Shew_0448 - periplasmic solute binding protein (RefSeq), at 499,187 to 500,098 _0448 Shew_0449: Shew_0449 - ABC-3 protein (RefSeq), at 500,159 to 500,950 _0449 Position (kb) 499 500 501Strain fitness (log2 ratio) -2 -1 0 1at 498.188 kb on + strand, within Shew_0447at 498.260 kb on + strand, within Shew_0447at 498.323 kb on - strand, within Shew_0447at 499.067 kb on - strand, within Shew_0447at 499.378 kb on - strand, within Shew_0448at 499.542 kb on + strand, within Shew_0448at 499.644 kb on - strand, within Shew_0448at 499.700 kb on + strand, within Shew_0448at 500.006 kb on - strand, within Shew_0448at 500.331 kb on - strand, within Shew_0449at 500.575 kb on - strand, within Shew_0449at 500.708 kb on - strand, within Shew_0449at 500.902 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Motility M3
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498,188 + Shew_0447 0.16 -1.8
498,260 + Shew_0447 0.22 +0.1
498,323 - Shew_0447 0.27 +0.1
499,067 - Shew_0447 0.89 -0.6
499,378 - Shew_0448 0.21 -0.4
499,542 + Shew_0448 0.39 +0.8
499,644 - Shew_0448 0.50 -2.1
499,700 + Shew_0448 0.56 +0.6
500,006 - Shew_0448 0.90 +0.2
500,331 - Shew_0449 0.22 +1.2
500,575 - Shew_0449 0.53 +0.3
500,708 - Shew_0449 0.69 +0.3
500,902 + +0.7

Or see this region's nucleotide sequence