Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0298 and Shew_0299 are separated by 164 nucleotides Shew_0299 and Shew_0300 are separated by 130 nucleotides Shew_0300 and Shew_0301 are separated by 237 nucleotides Shew_0301 and Shew_0302 are separated by 74 nucleotides
Shew_0298: Shew_0298 - Zn-dependent hydrolase of the beta-lactamase fold (RefSeq), at 319,961 to 321,049
_0298
Shew_0299: Shew_0299 - TetR family transcriptional regulator (RefSeq), at 321,214 to 321,822
_0299
Shew_0300: Shew_0300 - sodium:neurotransmitter symporter (RefSeq), at 321,953 to 323,311
_0300
Shew_0301: Shew_0301 - AsnC family transcriptional regulator (RefSeq), at 323,549 to 324,049
_0301
Shew_0302: Shew_0302 - phosphoesterase, PA-phosphatase related (RefSeq), at 324,124 to 324,891
_0302
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 320.960 kb on - strand at 321.034 kb on + strand at 321.251 kb on - strand at 321.387 kb on + strand, within Shew_0299 at 321.528 kb on - strand, within Shew_0299 at 321.629 kb on + strand, within Shew_0299 at 321.725 kb on + strand, within Shew_0299 at 321.762 kb on + strand at 321.782 kb on + strand at 321.825 kb on - strand at 321.888 kb on - strand at 322.088 kb on + strand at 322.217 kb on - strand, within Shew_0300 at 322.468 kb on - strand, within Shew_0300 at 322.664 kb on + strand, within Shew_0300 at 322.672 kb on - strand, within Shew_0300 at 322.945 kb on + strand, within Shew_0300 at 322.997 kb on + strand, within Shew_0300 at 323.139 kb on + strand, within Shew_0300 at 323.177 kb on + strand at 323.180 kb on - strand at 323.220 kb on + strand at 323.334 kb on - strand at 323.334 kb on - strand at 323.510 kb on + strand at 323.587 kb on + strand at 323.592 kb on - strand at 323.632 kb on - strand, within Shew_0301 at 324.066 kb on + strand at 324.244 kb on + strand, within Shew_0302 at 324.271 kb on + strand, within Shew_0302 at 324.295 kb on + strand, within Shew_0302
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 320,960 - +0.0 321,034 + -0.0 321,251 - -0.3 321,387 + Shew_0299 0.28 +0.5 321,528 - Shew_0299 0.52 +1.1 321,629 + Shew_0299 0.68 +0.9 321,725 + Shew_0299 0.84 +1.0 321,762 + +1.5 321,782 + -2.9 321,825 - +0.1 321,888 - -0.2 322,088 + +0.6 322,217 - Shew_0300 0.19 -0.3 322,468 - Shew_0300 0.38 -0.7 322,664 + Shew_0300 0.52 -0.3 322,672 - Shew_0300 0.53 +0.1 322,945 + Shew_0300 0.73 +0.2 322,997 + Shew_0300 0.77 +0.6 323,139 + Shew_0300 0.87 -1.3 323,177 + -0.1 323,180 - +0.4 323,220 + -2.5 323,334 - -0.6 323,334 - +1.4 323,510 + +0.8 323,587 + -0.0 323,592 - -0.4 323,632 - Shew_0301 0.17 +1.1 324,066 + -1.4 324,244 + Shew_0302 0.16 -0.6 324,271 + Shew_0302 0.19 -0.2 324,295 + Shew_0302 0.22 -0.4
Or see this region's nucleotide sequence