Experiment: Motility M3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0239 and Shew_0240 are separated by 64 nucleotides Shew_0240 and Shew_0241 overlap by 1 nucleotides Shew_0241 and Shew_0242 are separated by 10 nucleotides
Shew_0239: Shew_0239 - formate dehydrogenase, gamma subunit (RefSeq), at 255,646 to 256,626
_0239
Shew_0240: Shew_0240 - cytoplasmic chaperone TorD family protein (RefSeq), at 256,691 to 257,305
_0240
Shew_0241: Shew_0241 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 257,305 to 257,850
_0241
Shew_0242: Shew_0242 - molydopterin dinucleotide-binding region (RefSeq), at 257,861 to 260,074
_0242
Position (kb) 257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 256.379 kb on - strand, within Shew_0239 at 256.563 kb on + strand at 256.571 kb on - strand at 257.060 kb on + strand, within Shew_0240 at 257.281 kb on + strand at 257.567 kb on - strand, within Shew_0241 at 257.567 kb on - strand, within Shew_0241 at 257.584 kb on + strand, within Shew_0241 at 257.806 kb on + strand at 257.814 kb on - strand at 258.004 kb on + strand at 258.012 kb on - strand at 258.070 kb on + strand at 258.070 kb on + strand at 258.362 kb on - strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.403 kb on + strand, within Shew_0242 at 258.411 kb on - strand, within Shew_0242 at 258.424 kb on - strand, within Shew_0242 at 258.484 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.493 kb on - strand, within Shew_0242 at 258.602 kb on + strand, within Shew_0242
Per-strain Table
Position Strand Gene LocusTag Fraction Motility M3 remove 256,379 - Shew_0239 0.75 +0.1 256,563 + +0.4 256,571 - -0.6 257,060 + Shew_0240 0.60 -1.6 257,281 + -0.5 257,567 - Shew_0241 0.48 -1.5 257,567 - Shew_0241 0.48 +0.1 257,584 + Shew_0241 0.51 -1.7 257,806 + +0.3 257,814 - -1.4 258,004 + -0.0 258,012 - -0.2 258,070 + -0.3 258,070 + -0.3 258,362 - Shew_0242 0.23 +0.4 258,403 + Shew_0242 0.24 +0.3 258,403 + Shew_0242 0.24 -0.1 258,411 - Shew_0242 0.25 -3.1 258,424 - Shew_0242 0.25 -0.9 258,484 - Shew_0242 0.28 -0.0 258,493 - Shew_0242 0.29 +0.0 258,493 - Shew_0242 0.29 +1.3 258,602 + Shew_0242 0.33 -0.1
Or see this region's nucleotide sequence