Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4145 and Dshi_4146 are separated by 21 nucleotides Dshi_4146 and Dshi_4147 are separated by 188 nucleotides
Dshi_4145: Dshi_4145 - glycosyl transferase family 2 (RefSeq), at 77,191 to 78,195
_4145
Dshi_4146: Dshi_4146 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (RefSeq), at 78,217 to 79,641
_4146
Dshi_4147: Dshi_4147 - glycosyl transferase family 2 (RefSeq), at 79,830 to 80,822
_4147
Position (kb)
78
79
80 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 77.309 kb on - strand, within Dshi_4145 at 77.314 kb on - strand, within Dshi_4145 at 77.359 kb on - strand, within Dshi_4145 at 77.373 kb on - strand, within Dshi_4145 at 77.476 kb on + strand, within Dshi_4145 at 77.486 kb on + strand, within Dshi_4145 at 77.502 kb on + strand, within Dshi_4145 at 77.508 kb on - strand, within Dshi_4145 at 77.653 kb on - strand, within Dshi_4145 at 77.690 kb on - strand, within Dshi_4145 at 77.698 kb on + strand, within Dshi_4145 at 77.711 kb on + strand, within Dshi_4145 at 77.712 kb on - strand, within Dshi_4145 at 77.860 kb on - strand, within Dshi_4145 at 77.889 kb on - strand, within Dshi_4145 at 77.891 kb on - strand, within Dshi_4145 at 78.038 kb on + strand at 78.108 kb on + strand at 78.182 kb on + strand at 78.313 kb on - strand at 78.363 kb on - strand, within Dshi_4146 at 78.387 kb on - strand, within Dshi_4146 at 78.550 kb on - strand, within Dshi_4146 at 78.577 kb on - strand, within Dshi_4146 at 78.705 kb on + strand, within Dshi_4146 at 78.907 kb on - strand, within Dshi_4146 at 79.241 kb on + strand, within Dshi_4146 at 79.502 kb on + strand at 79.547 kb on + strand at 79.623 kb on + strand at 79.659 kb on + strand at 79.673 kb on + strand at 79.782 kb on + strand at 79.782 kb on + strand at 79.782 kb on + strand at 79.816 kb on - strand at 79.870 kb on - strand at 79.911 kb on - strand at 80.070 kb on + strand, within Dshi_4147 at 80.108 kb on - strand, within Dshi_4147 at 80.216 kb on - strand, within Dshi_4147 at 80.297 kb on - strand, within Dshi_4147
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 77,309 - Dshi_4145 0.12 +0.2 77,314 - Dshi_4145 0.12 -1.2 77,359 - Dshi_4145 0.17 -0.1 77,373 - Dshi_4145 0.18 +0.4 77,476 + Dshi_4145 0.28 -0.6 77,486 + Dshi_4145 0.29 -0.8 77,502 + Dshi_4145 0.31 -0.0 77,508 - Dshi_4145 0.32 +0.4 77,653 - Dshi_4145 0.46 -0.9 77,690 - Dshi_4145 0.50 -0.4 77,698 + Dshi_4145 0.50 +1.2 77,711 + Dshi_4145 0.52 +0.9 77,712 - Dshi_4145 0.52 +0.7 77,860 - Dshi_4145 0.67 +0.2 77,889 - Dshi_4145 0.69 +0.6 77,891 - Dshi_4145 0.70 -1.6 78,038 + -0.3 78,108 + -2.1 78,182 + -0.1 78,313 - -1.1 78,363 - Dshi_4146 0.10 -0.8 78,387 - Dshi_4146 0.12 -0.5 78,550 - Dshi_4146 0.23 -0.1 78,577 - Dshi_4146 0.25 +0.2 78,705 + Dshi_4146 0.34 -0.7 78,907 - Dshi_4146 0.48 -2.6 79,241 + Dshi_4146 0.72 +1.3 79,502 + +0.2 79,547 + -0.2 79,623 + +1.2 79,659 + +0.0 79,673 + +0.7 79,782 + +1.3 79,782 + +0.5 79,782 + +0.2 79,816 - +0.9 79,870 - +1.2 79,911 - -0.7 80,070 + Dshi_4147 0.24 -0.2 80,108 - Dshi_4147 0.28 +2.0 80,216 - Dshi_4147 0.39 +2.7 80,297 - Dshi_4147 0.47 -1.3
Or see this region's nucleotide sequence