Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1504

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1502 and Dshi_1503 are separated by 3 nucleotidesDshi_1503 and Dshi_1504 overlap by 1 nucleotidesDshi_1504 and Dshi_1505 overlap by 4 nucleotides Dshi_1502: Dshi_1502 - acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase (RefSeq), at 1,562,213 to 1,563,013 _1502 Dshi_1503: Dshi_1503 - protein of unknown function DUF1009 (RefSeq), at 1,563,017 to 1,563,814 _1503 Dshi_1504: Dshi_1504 - lipid-A-disaccharide synthase (RefSeq), at 1,563,814 to 1,564,956 _1504 Dshi_1505: Dshi_1505 - hypothetical protein (RefSeq), at 1,564,953 to 1,566,149 _1505 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -1 0 1at 1565.025 kb on - strandat 1565.116 kb on + strand, within Dshi_1505at 1565.148 kb on + strand, within Dshi_1505at 1565.287 kb on - strand, within Dshi_1505at 1565.305 kb on - strand, within Dshi_1505at 1565.353 kb on - strand, within Dshi_1505at 1565.504 kb on + strand, within Dshi_1505at 1565.579 kb on - strand, within Dshi_1505at 1565.863 kb on + strand, within Dshi_1505

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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1,565,025 - +0.8
1,565,116 + Dshi_1505 0.14 +0.1
1,565,148 + Dshi_1505 0.16 +0.7
1,565,287 - Dshi_1505 0.28 +1.1
1,565,305 - Dshi_1505 0.29 +0.2
1,565,353 - Dshi_1505 0.33 +0.6
1,565,504 + Dshi_1505 0.46 -0.1
1,565,579 - Dshi_1505 0.52 +0.4
1,565,863 + Dshi_1505 0.76 +0.8

Or see this region's nucleotide sequence