Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0812 and Dshi_0813 are separated by 54 nucleotides Dshi_0813 and Dshi_0814 are separated by 89 nucleotides Dshi_0814 and Dshi_0815 are separated by 204 nucleotides Dshi_0815 and Dshi_0816 are separated by 46 nucleotides Dshi_0816 and Dshi_0817 are separated by 76 nucleotides Dshi_0817 and Dshi_0818 overlap by 4 nucleotides Dshi_0818 and Dshi_0819 are separated by 24 nucleotides
Dshi_0812: Dshi_0812 - transcriptional regulator, TraR/DksA family (RefSeq), at 821,347 to 821,664
_0812
Dshi_0813: Dshi_0813 - hypothetical protein (RefSeq), at 821,719 to 821,967
_0813
Dshi_0814: Dshi_0814 - hypothetical protein (RefSeq), at 822,057 to 822,242
_0814
Dshi_0815: Dshi_0815 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 822,447 to 822,863
_0815
Dshi_0816: Dshi_0816 - hypothetical protein (RefSeq), at 822,910 to 823,185
_0816
Dshi_0817: Dshi_0817 - hypothetical protein (RefSeq), at 823,262 to 823,522
_0817
Dshi_0818: Dshi_0818 - hypothetical protein (RefSeq), at 823,519 to 823,725
_0818
Dshi_0819: Dshi_0819 - hypothetical protein (RefSeq), at 823,750 to 824,046
_0819
Position (kb)
822
823 Strain fitness (log2 ratio)
-1
0
1
2 at 821.461 kb on - strand, within Dshi_0812 at 821.488 kb on - strand, within Dshi_0812 at 821.529 kb on - strand, within Dshi_0812 at 821.613 kb on + strand, within Dshi_0812 at 821.621 kb on - strand, within Dshi_0812 at 821.637 kb on + strand at 821.709 kb on - strand at 821.812 kb on + strand, within Dshi_0813 at 821.844 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.878 kb on - strand, within Dshi_0813 at 821.940 kb on + strand, within Dshi_0813 at 821.969 kb on - strand at 821.969 kb on - strand at 821.971 kb on + strand at 822.021 kb on - strand at 822.038 kb on - strand at 822.275 kb on - strand at 822.280 kb on - strand at 822.532 kb on - strand, within Dshi_0815 at 822.683 kb on - strand, within Dshi_0815 at 822.713 kb on - strand, within Dshi_0815 at 822.771 kb on - strand, within Dshi_0815 at 822.796 kb on + strand, within Dshi_0815 at 822.993 kb on - strand, within Dshi_0816 at 823.175 kb on + strand at 823.242 kb on + strand at 823.242 kb on + strand at 823.267 kb on - strand at 823.288 kb on + strand, within Dshi_0817 at 823.306 kb on + strand, within Dshi_0817 at 823.321 kb on + strand, within Dshi_0817 at 823.384 kb on - strand, within Dshi_0817 at 823.573 kb on - strand, within Dshi_0818 at 823.708 kb on + strand at 823.793 kb on - strand, within Dshi_0819 at 823.830 kb on - strand, within Dshi_0819 at 823.857 kb on - strand, within Dshi_0819
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 821,461 - Dshi_0812 0.36 -0.2 821,488 - Dshi_0812 0.44 -0.8 821,529 - Dshi_0812 0.57 +0.2 821,613 + Dshi_0812 0.84 +0.5 821,621 - Dshi_0812 0.86 +0.7 821,637 + -0.1 821,709 - -1.0 821,812 + Dshi_0813 0.37 -1.0 821,844 - Dshi_0813 0.50 +0.3 821,878 - Dshi_0813 0.64 +0.7 821,878 - Dshi_0813 0.64 -0.1 821,940 + Dshi_0813 0.89 -1.1 821,969 - +0.1 821,969 - -0.7 821,971 + -1.5 822,021 - -0.6 822,038 - +0.7 822,275 - -0.0 822,280 - -0.3 822,532 - Dshi_0815 0.20 +0.2 822,683 - Dshi_0815 0.57 -0.4 822,713 - Dshi_0815 0.64 -0.9 822,771 - Dshi_0815 0.78 -0.2 822,796 + Dshi_0815 0.84 -0.7 822,993 - Dshi_0816 0.30 +0.5 823,175 + +0.0 823,242 + -0.5 823,242 + -0.5 823,267 - -0.7 823,288 + Dshi_0817 0.10 +0.3 823,306 + Dshi_0817 0.17 -0.1 823,321 + Dshi_0817 0.23 +0.4 823,384 - Dshi_0817 0.47 +1.8 823,573 - Dshi_0818 0.26 -0.3 823,708 + +0.2 823,793 - Dshi_0819 0.14 -0.1 823,830 - Dshi_0819 0.27 -0.6 823,857 - Dshi_0819 0.36 +0.2
Or see this region's nucleotide sequence