Experiment: m.b. Sisomicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0779 and Dshi_R0019 are separated by 75 nucleotides Dshi_R0019 and Dshi_0780 are separated by 18 nucleotides Dshi_0780 and Dshi_0781 are separated by 4 nucleotides
Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522
_0779
Dshi_R0019: Dshi_R0019 - tRNA-His (RefSeq), at 785,598 to 785,674
_R0019
Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637
_0780
Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929
_0781
Position (kb) 785
786 Strain fitness (log2 ratio) -1
0
1 at 784.882 kb on - strand, within Dshi_0779 at 785.031 kb on - strand, within Dshi_0779 at 785.234 kb on - strand, within Dshi_0779 at 785.288 kb on - strand, within Dshi_0779 at 785.330 kb on - strand, within Dshi_0779 at 785.477 kb on - strand at 785.891 kb on + strand, within Dshi_0780 at 785.896 kb on + strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.901 kb on + strand, within Dshi_0780 at 785.904 kb on - strand, within Dshi_0780 at 785.909 kb on - strand, within Dshi_0780 at 785.957 kb on - strand, within Dshi_0780 at 785.999 kb on - strand, within Dshi_0780 at 786.014 kb on - strand, within Dshi_0780 at 786.041 kb on - strand at 786.084 kb on - strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.192 kb on + strand, within Dshi_0780 at 786.194 kb on + strand, within Dshi_0780 at 786.198 kb on - strand, within Dshi_0780 at 786.274 kb on + strand, within Dshi_0780 at 786.362 kb on + strand, within Dshi_0780 at 786.370 kb on - strand, within Dshi_0780 at 786.406 kb on - strand, within Dshi_0780 at 786.523 kb on - strand, within Dshi_0780 at 786.600 kb on + strand at 786.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml remove 784,882 - Dshi_0779 0.33 -0.4 785,031 - Dshi_0779 0.49 +0.9 785,234 - Dshi_0779 0.70 +0.7 785,288 - Dshi_0779 0.75 +1.0 785,330 - Dshi_0779 0.80 +0.1 785,477 - -0.5 785,891 + Dshi_0780 0.21 -0.3 785,896 + Dshi_0780 0.21 +0.2 785,899 - Dshi_0780 0.22 -0.1 785,899 - Dshi_0780 0.22 -0.9 785,901 + Dshi_0780 0.22 -0.5 785,904 - Dshi_0780 0.22 +0.3 785,909 - Dshi_0780 0.23 +0.0 785,957 - Dshi_0780 0.28 +0.8 785,999 - Dshi_0780 0.32 -0.5 786,014 - Dshi_0780 0.34 -0.3 786,041 - +0.1 786,084 - Dshi_0780 0.41 -1.4 786,180 + Dshi_0780 0.52 -0.9 786,180 + Dshi_0780 0.52 +0.0 786,192 + Dshi_0780 0.53 -1.1 786,194 + Dshi_0780 0.53 +0.1 786,198 - Dshi_0780 0.53 +0.2 786,274 + Dshi_0780 0.61 +0.4 786,362 + Dshi_0780 0.71 -1.2 786,370 - Dshi_0780 0.72 +0.4 786,406 - Dshi_0780 0.75 +0.8 786,523 - Dshi_0780 0.88 -0.2 786,600 + +0.3 786,621 + +0.8
Or see this region's nucleotide sequence