Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0741

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0740 and Dshi_0741 are separated by 39 nucleotidesDshi_0741 and Dshi_0742 overlap by 4 nucleotides Dshi_0740: Dshi_0740 - Polyphosphate kinase (RefSeq), at 746,526 to 748,700 _0740 Dshi_0741: Dshi_0741 - chromosomal replication initiator, DnaA (RefSeq), at 748,740 to 749,429 _0741 Dshi_0742: Dshi_0742 - protein of unknown function UPF0118 (RefSeq), at 749,426 to 750,511 _0742 Position (kb) 748 749 750Strain fitness (log2 ratio) -1 0 1at 748.116 kb on - strand, within Dshi_0740at 748.197 kb on + strand, within Dshi_0740at 748.222 kb on + strand, within Dshi_0740at 748.390 kb on - strand, within Dshi_0740at 748.576 kb on - strandat 748.604 kb on + strandat 748.650 kb on - strandat 748.674 kb on - strandat 749.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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748,116 - Dshi_0740 0.73 -0.8
748,197 + Dshi_0740 0.77 -0.2
748,222 + Dshi_0740 0.78 +0.8
748,390 - Dshi_0740 0.86 +0.3
748,576 - +0.8
748,604 + +0.1
748,650 - +0.4
748,674 - +0.4
749,487 + -1.0

Or see this region's nucleotide sequence