Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0536

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0535 and Dshi_0536 are separated by 26 nucleotidesDshi_0536 and Dshi_0537 are separated by 29 nucleotides Dshi_0535: Dshi_0535 - Transketolase central region (RefSeq), at 519,929 to 520,912 _0535 Dshi_0536: Dshi_0536 - biotin/lipoyl attachment domain-containing protein (RefSeq), at 520,939 to 522,135 _0536 Dshi_0537: Dshi_0537 - carbohydrate kinase FGGY (RefSeq), at 522,165 to 523,658 _0537 Position (kb) 520 521 522 523Strain fitness (log2 ratio) -2 -1 0 1 2at 519.940 kb on + strandat 519.940 kb on + strandat 520.042 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.154 kb on + strand, within Dshi_0535at 520.172 kb on + strand, within Dshi_0535at 520.288 kb on + strand, within Dshi_0535at 520.301 kb on - strand, within Dshi_0535at 520.316 kb on + strand, within Dshi_0535at 520.324 kb on - strand, within Dshi_0535at 520.353 kb on + strand, within Dshi_0535at 520.580 kb on + strand, within Dshi_0535at 520.589 kb on - strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.645 kb on - strand, within Dshi_0535at 520.655 kb on - strand, within Dshi_0535at 520.673 kb on + strand, within Dshi_0535at 520.684 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on - strand, within Dshi_0535at 520.742 kb on - strand, within Dshi_0535at 520.751 kb on - strand, within Dshi_0535at 520.779 kb on - strand, within Dshi_0535at 520.796 kb on + strand, within Dshi_0535at 520.822 kb on - strandat 520.833 kb on + strandat 520.925 kb on + strandat 520.950 kb on + strandat 521.014 kb on - strandat 521.042 kb on - strandat 521.068 kb on + strand, within Dshi_0536at 521.076 kb on - strand, within Dshi_0536at 521.088 kb on + strand, within Dshi_0536at 521.098 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.161 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.179 kb on - strand, within Dshi_0536at 521.234 kb on + strand, within Dshi_0536at 521.339 kb on + strand, within Dshi_0536at 521.415 kb on + strand, within Dshi_0536at 521.423 kb on - strand, within Dshi_0536at 521.440 kb on + strand, within Dshi_0536at 521.500 kb on - strand, within Dshi_0536at 521.534 kb on + strand, within Dshi_0536at 521.587 kb on - strand, within Dshi_0536at 521.614 kb on - strand, within Dshi_0536at 521.678 kb on + strand, within Dshi_0536at 521.797 kb on - strand, within Dshi_0536at 521.934 kb on - strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.994 kb on + strand, within Dshi_0536at 522.066 kb on + strandat 522.106 kb on - strandat 522.140 kb on + strandat 522.153 kb on - strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.190 kb on + strandat 522.204 kb on - strandat 522.303 kb on + strandat 522.303 kb on + strandat 522.334 kb on - strand, within Dshi_0537at 522.425 kb on + strand, within Dshi_0537at 522.468 kb on + strand, within Dshi_0537at 522.498 kb on + strand, within Dshi_0537at 522.541 kb on + strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.551 kb on + strand, within Dshi_0537at 522.563 kb on + strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.665 kb on + strand, within Dshi_0537at 522.694 kb on - strand, within Dshi_0537at 522.707 kb on - strand, within Dshi_0537at 522.756 kb on + strand, within Dshi_0537at 522.769 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.916 kb on + strand, within Dshi_0537at 522.936 kb on + strand, within Dshi_0537at 522.942 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 523.027 kb on - strand, within Dshi_0537at 523.106 kb on + strand, within Dshi_0537

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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519,940 + +0.2
519,940 + -0.4
520,042 + Dshi_0535 0.11 -0.7
520,133 + Dshi_0535 0.21 +0.0
520,133 + Dshi_0535 0.21 -0.0
520,154 + Dshi_0535 0.23 -0.0
520,172 + Dshi_0535 0.25 +0.6
520,288 + Dshi_0535 0.36 +0.3
520,301 - Dshi_0535 0.38 +0.1
520,316 + Dshi_0535 0.39 +0.3
520,324 - Dshi_0535 0.40 -0.0
520,353 + Dshi_0535 0.43 -0.1
520,580 + Dshi_0535 0.66 -0.2
520,589 - Dshi_0535 0.67 +0.4
520,592 + Dshi_0535 0.67 -0.1
520,592 + Dshi_0535 0.67 -0.1
520,645 - Dshi_0535 0.73 -0.1
520,655 - Dshi_0535 0.74 -0.3
520,673 + Dshi_0535 0.76 -0.3
520,684 + Dshi_0535 0.77 +0.3
520,731 + Dshi_0535 0.82 -0.2
520,731 + Dshi_0535 0.82 -0.1
520,731 - Dshi_0535 0.82 +0.4
520,742 - Dshi_0535 0.83 -0.6
520,751 - Dshi_0535 0.84 +0.0
520,779 - Dshi_0535 0.86 +0.0
520,796 + Dshi_0535 0.88 -0.4
520,822 - -0.4
520,833 + -0.5
520,925 + -0.2
520,950 + +0.9
521,014 - +0.5
521,042 - +0.0
521,068 + Dshi_0536 0.11 -0.7
521,076 - Dshi_0536 0.11 +0.4
521,088 + Dshi_0536 0.12 -0.9
521,098 + Dshi_0536 0.13 +0.6
521,161 + Dshi_0536 0.19 -0.7
521,161 + Dshi_0536 0.19 -0.2
521,161 + Dshi_0536 0.19 -2.0
521,171 + Dshi_0536 0.19 +0.9
521,171 + Dshi_0536 0.19 -0.4
521,179 - Dshi_0536 0.20 +0.2
521,234 + Dshi_0536 0.25 +0.1
521,339 + Dshi_0536 0.33 -0.8
521,415 + Dshi_0536 0.40 +1.1
521,423 - Dshi_0536 0.40 +0.1
521,440 + Dshi_0536 0.42 -1.3
521,500 - Dshi_0536 0.47 -0.2
521,534 + Dshi_0536 0.50 -0.5
521,587 - Dshi_0536 0.54 -0.0
521,614 - Dshi_0536 0.56 -0.9
521,678 + Dshi_0536 0.62 +0.0
521,797 - Dshi_0536 0.72 -0.2
521,934 - Dshi_0536 0.83 -0.8
521,953 + Dshi_0536 0.85 +0.2
521,953 + Dshi_0536 0.85 +0.1
521,994 + Dshi_0536 0.88 +1.3
522,066 + +0.1
522,106 - -0.3
522,140 + -1.1
522,153 - +0.3
522,155 + +0.5
522,155 + -0.8
522,155 + +0.9
522,155 + -0.2
522,190 + -0.4
522,204 - +0.4
522,303 + -1.0
522,303 + +1.1
522,334 - Dshi_0537 0.11 -0.3
522,425 + Dshi_0537 0.17 -0.2
522,468 + Dshi_0537 0.20 +0.3
522,498 + Dshi_0537 0.22 -0.2
522,541 + Dshi_0537 0.25 +0.5
522,549 - Dshi_0537 0.26 +0.4
522,549 - Dshi_0537 0.26 -1.3
522,551 + Dshi_0537 0.26 +0.6
522,563 + Dshi_0537 0.27 +0.0
522,663 - Dshi_0537 0.33 -0.1
522,663 - Dshi_0537 0.33 +0.2
522,665 + Dshi_0537 0.33 +0.3
522,694 - Dshi_0537 0.35 +0.1
522,707 - Dshi_0537 0.36 +1.5
522,756 + Dshi_0537 0.40 +1.9
522,769 - Dshi_0537 0.40 -0.4
522,774 - Dshi_0537 0.41 -0.2
522,774 - Dshi_0537 0.41 -0.8
522,869 + Dshi_0537 0.47 -0.1
522,869 + Dshi_0537 0.47 -0.7
522,916 + Dshi_0537 0.50 +0.5
522,936 + Dshi_0537 0.52 +0.1
522,942 - Dshi_0537 0.52 -0.5
522,944 - Dshi_0537 0.52 +0.7
522,944 - Dshi_0537 0.52 +0.9
523,027 - Dshi_0537 0.58 +0.3
523,106 + Dshi_0537 0.63 -0.5

Or see this region's nucleotide sequence