Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0005

Experiment: m.b. Sisomicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0004 and Dshi_0005 are separated by 105 nucleotidesDshi_0005 and Dshi_0006 are separated by 103 nucleotides Dshi_0004: Dshi_0004 - hypothetical protein (RefSeq), at 7,257 to 8,114 _0004 Dshi_0005: Dshi_0005 - hypothetical protein (RefSeq), at 8,220 to 8,924 _0005 Dshi_0006: Dshi_0006 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (RefSeq), at 9,028 to 9,855 _0006 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.223 kb on - strandat 7.234 kb on + strandat 7.241 kb on - strandat 7.245 kb on + strandat 7.245 kb on + strandat 7.253 kb on - strandat 7.253 kb on - strandat 7.257 kb on + strandat 7.270 kb on - strandat 7.270 kb on - strandat 7.275 kb on - strandat 7.297 kb on + strandat 7.297 kb on + strandat 7.307 kb on + strandat 7.312 kb on + strandat 7.320 kb on - strandat 7.320 kb on - strandat 7.325 kb on - strandat 7.342 kb on - strandat 7.349 kb on - strand, within Dshi_0004at 7.351 kb on + strand, within Dshi_0004at 7.362 kb on + strand, within Dshi_0004at 7.373 kb on + strand, within Dshi_0004at 7.418 kb on - strand, within Dshi_0004at 7.457 kb on + strand, within Dshi_0004at 7.474 kb on + strand, within Dshi_0004at 7.474 kb on + strand, within Dshi_0004at 7.474 kb on + strand, within Dshi_0004at 7.482 kb on - strand, within Dshi_0004at 7.482 kb on - strand, within Dshi_0004at 7.485 kb on + strand, within Dshi_0004at 7.486 kb on - strand, within Dshi_0004at 7.486 kb on - strand, within Dshi_0004at 7.537 kb on + strand, within Dshi_0004at 7.615 kb on + strand, within Dshi_0004at 7.615 kb on + strand, within Dshi_0004at 7.720 kb on - strand, within Dshi_0004at 7.720 kb on - strand, within Dshi_0004at 7.749 kb on + strand, within Dshi_0004at 7.810 kb on - strand, within Dshi_0004at 7.810 kb on - strand, within Dshi_0004at 7.821 kb on - strand, within Dshi_0004at 7.843 kb on + strand, within Dshi_0004at 7.870 kb on - strand, within Dshi_0004at 7.933 kb on + strand, within Dshi_0004at 7.998 kb on + strand, within Dshi_0004at 8.028 kb on + strand, within Dshi_0004at 8.028 kb on + strand, within Dshi_0004at 8.028 kb on + strand, within Dshi_0004at 8.028 kb on + strand, within Dshi_0004at 8.031 kb on - strandat 8.036 kb on - strandat 8.036 kb on - strandat 8.036 kb on - strandat 8.036 kb on - strandat 8.048 kb on - strandat 8.085 kb on + strandat 8.117 kb on - strandat 8.141 kb on - strandat 8.205 kb on - strandat 8.259 kb on + strandat 8.351 kb on + strand, within Dshi_0005at 8.449 kb on - strand, within Dshi_0005at 8.569 kb on + strand, within Dshi_0005at 8.587 kb on - strand, within Dshi_0005at 8.647 kb on + strand, within Dshi_0005at 8.683 kb on + strand, within Dshi_0005at 8.828 kb on - strand, within Dshi_0005at 8.830 kb on + strand, within Dshi_0005at 9.858 kb on - strandat 9.866 kb on - strandat 9.880 kb on + strandat 9.880 kb on + strandat 9.880 kb on + strandat 9.885 kb on + strandat 9.885 kb on + strandat 9.888 kb on - strandat 9.888 kb on - strandat 9.890 kb on + strandat 9.890 kb on + strandat 9.895 kb on + strandat 9.898 kb on - strandat 9.900 kb on - strandat 9.903 kb on - strandat 9.913 kb on - strandat 9.913 kb on - strandat 9.915 kb on + strandat 9.915 kb on + strandat 9.917 kb on + strandat 9.923 kb on - strandat 9.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Sisomicin 0.004 mg/ml
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7,223 - +0.3
7,234 + +0.4
7,241 - +1.2
7,245 + -2.0
7,245 + +0.1
7,253 - -0.6
7,253 - +0.4
7,257 + -1.4
7,270 - -0.4
7,270 - +1.4
7,275 - -0.4
7,297 + -0.8
7,297 + -0.1
7,307 + +0.2
7,312 + +0.2
7,320 - +0.0
7,320 - +1.2
7,325 - +0.2
7,342 - -0.3
7,349 - Dshi_0004 0.11 +0.6
7,351 + Dshi_0004 0.11 -0.0
7,362 + Dshi_0004 0.12 -0.5
7,373 + Dshi_0004 0.14 -0.2
7,418 - Dshi_0004 0.19 -0.1
7,457 + Dshi_0004 0.23 -0.8
7,474 + Dshi_0004 0.25 +1.1
7,474 + Dshi_0004 0.25 +1.0
7,474 + Dshi_0004 0.25 +1.0
7,482 - Dshi_0004 0.26 +0.7
7,482 - Dshi_0004 0.26 +0.4
7,485 + Dshi_0004 0.27 +0.1
7,486 - Dshi_0004 0.27 +0.3
7,486 - Dshi_0004 0.27 -0.3
7,537 + Dshi_0004 0.33 +0.9
7,615 + Dshi_0004 0.42 +0.3
7,615 + Dshi_0004 0.42 +0.1
7,720 - Dshi_0004 0.54 -0.4
7,720 - Dshi_0004 0.54 +2.2
7,749 + Dshi_0004 0.57 +0.4
7,810 - Dshi_0004 0.64 +0.1
7,810 - Dshi_0004 0.64 -2.0
7,821 - Dshi_0004 0.66 +0.3
7,843 + Dshi_0004 0.68 -0.3
7,870 - Dshi_0004 0.71 +0.1
7,933 + Dshi_0004 0.79 -0.3
7,998 + Dshi_0004 0.86 +0.1
8,028 + Dshi_0004 0.90 +0.2
8,028 + Dshi_0004 0.90 -0.4
8,028 + Dshi_0004 0.90 +0.2
8,028 + Dshi_0004 0.90 +2.0
8,031 - -0.1
8,036 - +0.0
8,036 - +0.6
8,036 - -0.3
8,036 - +0.6
8,048 - +0.6
8,085 + -0.6
8,117 - +2.3
8,141 - -0.1
8,205 - +1.1
8,259 + -1.7
8,351 + Dshi_0005 0.19 -0.1
8,449 - Dshi_0005 0.32 -0.9
8,569 + Dshi_0005 0.50 -0.0
8,587 - Dshi_0005 0.52 +0.3
8,647 + Dshi_0005 0.61 +1.0
8,683 + Dshi_0005 0.66 +0.5
8,828 - Dshi_0005 0.86 +0.8
8,830 + Dshi_0005 0.87 -0.6
9,858 - -0.3
9,866 - +0.2
9,880 + -0.1
9,880 + -0.3
9,880 + -0.2
9,885 + +0.4
9,885 + +0.1
9,888 - +0.6
9,888 - +0.1
9,890 + -0.1
9,890 + +0.3
9,895 + -0.4
9,898 - +0.3
9,900 - +0.9
9,903 - -0.3
9,913 - -0.3
9,913 - -0.0
9,915 + +0.6
9,915 + -0.8
9,917 + +1.0
9,923 - -0.0
9,924 - -0.4

Or see this region's nucleotide sequence