Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2902

Experiment: MoYLS4 with Nitrite 0.025mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2900 and pyrB are separated by 13 nucleotidespyrB and pyrC overlap by 1 nucleotidespyrC and pcnB2 are separated by 317 nucleotides DVU2900: DVU2900 - amidohydrolase family protein (TIGR), at 2,999,180 to 3,000,379 DVU2900 DVU2901: pyrB - aspartate carbamoyltransferase (TIGR), at 3,000,393 to 3,001,346 pyrB DVU2902: pyrC - dihydroorotase (TIGR), at 3,001,346 to 3,002,614 pyrC DVU2903: pcnB2 - HD domain protein (TIGR), at 3,002,932 to 3,004,260 pcnB2 Position (kb) 3001 3002 3003Strain fitness (log2 ratio) -1 0 1at 3000.349 kb on + strandat 3000.379 kb on + strandat 3002.724 kb on + strandat 3002.732 kb on - strandat 3002.766 kb on - strandat 3002.925 kb on - strandat 3002.949 kb on - strandat 3002.987 kb on + strandat 3003.288 kb on + strand, within pcnB2at 3003.288 kb on + strand, within pcnB2at 3003.288 kb on + strand, within pcnB2at 3003.304 kb on + strand, within pcnB2at 3003.312 kb on + strand, within pcnB2at 3003.322 kb on + strand, within pcnB2at 3003.466 kb on + strand, within pcnB2at 3003.495 kb on - strand, within pcnB2

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL
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3,000,349 + -0.9
3,000,379 + +0.3
3,002,724 + -0.5
3,002,732 - -0.3
3,002,766 - -0.1
3,002,925 - -0.4
3,002,949 - -0.6
3,002,987 + +0.4
3,003,288 + pcnB2 DVU2903 0.27 -1.7
3,003,288 + pcnB2 DVU2903 0.27 -0.1
3,003,288 + pcnB2 DVU2903 0.27 -1.0
3,003,304 + pcnB2 DVU2903 0.28 -0.4
3,003,312 + pcnB2 DVU2903 0.29 +0.4
3,003,322 + pcnB2 DVU2903 0.29 -0.1
3,003,466 + pcnB2 DVU2903 0.40 -0.4
3,003,495 - pcnB2 DVU2903 0.42 +0.1

Or see this region's nucleotide sequence