Experiment: Hydrochloric Acid 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_95 and Pf6N2E2_96 are separated by 4 nucleotides Pf6N2E2_96 and Pf6N2E2_97 are separated by 93 nucleotides Pf6N2E2_97 and Pf6N2E2_98 overlap by 4 nucleotides
Pf6N2E2_95 - putative oxygenase (putative secreted protein), at 140,697 to 141,782
_95
Pf6N2E2_96 - FIG011065: hypothetical protein, at 141,787 to 142,551
_96
Pf6N2E2_97 - putataive branched-chain amino acid transport protein AzlC, at 142,645 to 143,355
_97
Pf6N2E2_98 - putative transmembrane protein, at 143,352 to 143,660
_98
Position (kb) 141
142
143 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 140.809 kb on + strand, within Pf6N2E2_95 at 140.810 kb on - strand at 141.033 kb on + strand, within Pf6N2E2_95 at 141.148 kb on + strand, within Pf6N2E2_95 at 141.148 kb on + strand, within Pf6N2E2_95 at 141.149 kb on - strand, within Pf6N2E2_95 at 141.149 kb on - strand, within Pf6N2E2_95 at 141.149 kb on - strand, within Pf6N2E2_95 at 141.149 kb on - strand, within Pf6N2E2_95 at 141.149 kb on - strand, within Pf6N2E2_95 at 141.149 kb on - strand, within Pf6N2E2_95 at 141.292 kb on - strand, within Pf6N2E2_95 at 141.507 kb on + strand, within Pf6N2E2_95 at 141.507 kb on + strand, within Pf6N2E2_95 at 141.593 kb on - strand, within Pf6N2E2_95 at 141.806 kb on + strand at 141.806 kb on + strand at 141.806 kb on + strand at 141.806 kb on + strand at 141.806 kb on + strand at 141.806 kb on + strand at 141.806 kb on + strand at 141.807 kb on - strand at 141.807 kb on - strand at 141.807 kb on - strand at 141.807 kb on - strand at 141.807 kb on - strand at 141.807 kb on - strand at 141.807 kb on - strand at 141.807 kb on - strand at 141.807 kb on - strand at 142.107 kb on - strand, within Pf6N2E2_96 at 142.107 kb on - strand, within Pf6N2E2_96 at 142.126 kb on + strand, within Pf6N2E2_96 at 142.127 kb on - strand, within Pf6N2E2_96 at 142.229 kb on - strand, within Pf6N2E2_96 at 142.390 kb on + strand, within Pf6N2E2_96 at 142.390 kb on + strand, within Pf6N2E2_96 at 142.390 kb on + strand, within Pf6N2E2_96 at 142.391 kb on - strand, within Pf6N2E2_96 at 142.528 kb on + strand at 142.528 kb on + strand at 142.528 kb on + strand at 142.528 kb on + strand at 142.529 kb on - strand at 142.560 kb on + strand at 142.602 kb on - strand at 142.602 kb on - strand at 142.602 kb on - strand at 142.621 kb on + strand at 142.621 kb on + strand at 142.621 kb on + strand at 142.621 kb on + strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.622 kb on - strand at 142.693 kb on + strand at 142.693 kb on + strand at 142.693 kb on + strand at 142.693 kb on + strand at 142.693 kb on + strand at 142.693 kb on + strand at 142.694 kb on - strand at 142.694 kb on - strand at 142.694 kb on - strand at 142.694 kb on - strand at 142.788 kb on + strand, within Pf6N2E2_97 at 142.788 kb on + strand, within Pf6N2E2_97 at 142.788 kb on + strand, within Pf6N2E2_97 at 142.788 kb on + strand, within Pf6N2E2_97 at 142.789 kb on - strand, within Pf6N2E2_97 at 142.800 kb on - strand, within Pf6N2E2_97 at 143.230 kb on - strand, within Pf6N2E2_97 at 143.392 kb on + strand, within Pf6N2E2_98 at 143.393 kb on - strand, within Pf6N2E2_98
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrochloric Acid 0.005 M remove 140,809 + Pf6N2E2_95 0.10 -0.3 140,810 - +3.3 141,033 + Pf6N2E2_95 0.31 -0.3 141,148 + Pf6N2E2_95 0.42 -0.7 141,148 + Pf6N2E2_95 0.42 -0.6 141,149 - Pf6N2E2_95 0.42 +1.0 141,149 - Pf6N2E2_95 0.42 +0.0 141,149 - Pf6N2E2_95 0.42 -1.3 141,149 - Pf6N2E2_95 0.42 -0.3 141,149 - Pf6N2E2_95 0.42 +1.0 141,149 - Pf6N2E2_95 0.42 -0.4 141,292 - Pf6N2E2_95 0.55 -0.3 141,507 + Pf6N2E2_95 0.75 +0.3 141,507 + Pf6N2E2_95 0.75 -0.3 141,593 - Pf6N2E2_95 0.83 -0.2 141,806 + +0.3 141,806 + -1.9 141,806 + +0.6 141,806 + -0.0 141,806 + +0.3 141,806 + +0.4 141,806 + +0.6 141,807 - -0.0 141,807 - -0.3 141,807 - +0.7 141,807 - -0.8 141,807 - -2.1 141,807 - +0.4 141,807 - -0.2 141,807 - -0.3 141,807 - -0.8 142,107 - Pf6N2E2_96 0.42 -1.0 142,107 - Pf6N2E2_96 0.42 -1.8 142,126 + Pf6N2E2_96 0.44 +0.2 142,127 - Pf6N2E2_96 0.44 -0.7 142,229 - Pf6N2E2_96 0.58 +0.1 142,390 + Pf6N2E2_96 0.79 -2.8 142,390 + Pf6N2E2_96 0.79 -0.4 142,390 + Pf6N2E2_96 0.79 +0.3 142,391 - Pf6N2E2_96 0.79 +0.1 142,528 + +0.5 142,528 + +0.9 142,528 + -2.8 142,528 + +0.5 142,529 - -0.7 142,560 + -1.7 142,602 - +0.6 142,602 - +0.8 142,602 - -2.1 142,621 + -0.6 142,621 + -0.6 142,621 + +0.6 142,621 + +0.1 142,622 - +2.3 142,622 - -0.1 142,622 - +0.5 142,622 - -0.6 142,622 - -0.5 142,622 - -0.0 142,622 - +0.9 142,693 + +0.2 142,693 + +0.3 142,693 + -1.5 142,693 + +0.3 142,693 + -0.3 142,693 + +0.3 142,694 - +0.2 142,694 - -0.5 142,694 - -1.0 142,694 - -0.5 142,788 + Pf6N2E2_97 0.20 -0.1 142,788 + Pf6N2E2_97 0.20 -0.6 142,788 + Pf6N2E2_97 0.20 +0.9 142,788 + Pf6N2E2_97 0.20 -0.6 142,789 - Pf6N2E2_97 0.20 +0.6 142,800 - Pf6N2E2_97 0.22 -0.0 143,230 - Pf6N2E2_97 0.82 +2.7 143,392 + Pf6N2E2_98 0.13 +1.1 143,393 - Pf6N2E2_98 0.13 -0.1
Or see this region's nucleotide sequence