Experiment: Hydrochloric Acid 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_832 and Pf6N2E2_833 are separated by 383 nucleotides Pf6N2E2_833 and Pf6N2E2_834 overlap by 4 nucleotides
Pf6N2E2_832 - Outer membrane component of tripartite multidrug resistance system, at 970,212 to 971,675
_832
Pf6N2E2_833 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 972,059 to 973,003
_833
Pf6N2E2_834 - Cation efflux system protein, at 973,000 to 976,080
_834
Position (kb) 972
973
974 Strain fitness (log2 ratio) -2
-1
0
1 at 971.082 kb on - strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.116 kb on + strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.117 kb on - strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.263 kb on + strand, within Pf6N2E2_832 at 971.264 kb on - strand, within Pf6N2E2_832 at 971.360 kb on + strand, within Pf6N2E2_832 at 971.360 kb on + strand, within Pf6N2E2_832 at 971.361 kb on - strand, within Pf6N2E2_832 at 971.534 kb on + strand at 971.602 kb on + strand at 971.603 kb on - strand at 971.646 kb on + strand at 971.762 kb on + strand at 971.763 kb on - strand at 971.763 kb on - strand at 971.772 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.893 kb on + strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 971.894 kb on - strand at 972.399 kb on - strand, within Pf6N2E2_833 at 972.649 kb on + strand, within Pf6N2E2_833 at 972.650 kb on - strand, within Pf6N2E2_833 at 972.665 kb on + strand, within Pf6N2E2_833 at 972.666 kb on - strand, within Pf6N2E2_833 at 972.776 kb on + strand, within Pf6N2E2_833 at 973.049 kb on + strand at 973.050 kb on - strand at 973.050 kb on - strand at 973.150 kb on - strand at 973.234 kb on + strand at 973.252 kb on + strand at 973.252 kb on + strand at 973.252 kb on + strand at 973.253 kb on - strand at 973.253 kb on - strand at 973.253 kb on - strand at 973.330 kb on + strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.331 kb on - strand, within Pf6N2E2_834 at 973.409 kb on - strand, within Pf6N2E2_834 at 973.643 kb on + strand, within Pf6N2E2_834 at 973.644 kb on - strand, within Pf6N2E2_834
Per-strain Table
Position Strand Gene LocusTag Fraction Hydrochloric Acid 0.005 M remove 971,082 - Pf6N2E2_832 0.59 -1.4 971,116 + Pf6N2E2_832 0.62 +0.1 971,116 + Pf6N2E2_832 0.62 -0.7 971,116 + Pf6N2E2_832 0.62 -0.1 971,116 + Pf6N2E2_832 0.62 +0.2 971,116 + Pf6N2E2_832 0.62 -0.5 971,116 + Pf6N2E2_832 0.62 -1.0 971,116 + Pf6N2E2_832 0.62 -0.9 971,116 + Pf6N2E2_832 0.62 +0.4 971,116 + Pf6N2E2_832 0.62 +0.2 971,117 - Pf6N2E2_832 0.62 +0.9 971,117 - Pf6N2E2_832 0.62 -0.5 971,117 - Pf6N2E2_832 0.62 -0.7 971,117 - Pf6N2E2_832 0.62 -0.4 971,117 - Pf6N2E2_832 0.62 -0.1 971,117 - Pf6N2E2_832 0.62 -0.1 971,117 - Pf6N2E2_832 0.62 +1.3 971,117 - Pf6N2E2_832 0.62 -2.0 971,117 - Pf6N2E2_832 0.62 +0.1 971,117 - Pf6N2E2_832 0.62 +0.8 971,263 + Pf6N2E2_832 0.72 +0.5 971,263 + Pf6N2E2_832 0.72 -0.4 971,263 + Pf6N2E2_832 0.72 +0.3 971,263 + Pf6N2E2_832 0.72 +1.0 971,264 - Pf6N2E2_832 0.72 -0.3 971,360 + Pf6N2E2_832 0.78 +1.3 971,360 + Pf6N2E2_832 0.78 -0.6 971,361 - Pf6N2E2_832 0.78 +0.5 971,534 + -0.1 971,602 + -1.7 971,603 - -0.6 971,646 + +0.9 971,762 + -0.2 971,763 - +1.5 971,763 - +0.0 971,772 + +0.1 971,893 + -0.7 971,893 + +0.9 971,893 + -0.0 971,893 + -0.2 971,893 + +0.5 971,894 - -1.1 971,894 - -1.0 971,894 - +0.5 971,894 - +0.0 971,894 - +0.2 971,894 - -0.7 971,894 - +1.1 971,894 - -1.0 972,399 - Pf6N2E2_833 0.36 -1.0 972,649 + Pf6N2E2_833 0.62 -1.2 972,650 - Pf6N2E2_833 0.63 -0.9 972,665 + Pf6N2E2_833 0.64 +0.9 972,666 - Pf6N2E2_833 0.64 -0.2 972,776 + Pf6N2E2_833 0.76 -1.1 973,049 + -0.7 973,050 - -0.7 973,050 - +1.1 973,150 - -0.8 973,234 + +0.6 973,252 + +0.6 973,252 + +0.9 973,252 + -0.3 973,253 - -0.4 973,253 - +0.1 973,253 - -1.0 973,330 + Pf6N2E2_834 0.11 -0.3 973,331 - Pf6N2E2_834 0.11 -1.0 973,331 - Pf6N2E2_834 0.11 -0.4 973,331 - Pf6N2E2_834 0.11 +0.1 973,409 - Pf6N2E2_834 0.13 -0.4 973,643 + Pf6N2E2_834 0.21 -0.2 973,644 - Pf6N2E2_834 0.21 -1.1
Or see this region's nucleotide sequence