Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2999

Experiment: Hydrochloric Acid 0.005 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_2998 and Pf6N2E2_2999 are separated by 28 nucleotidesPf6N2E2_2999 and Pf6N2E2_3000 overlap by 4 nucleotides Pf6N2E2_2998 - Prophage tail fiber protein, at 3,488,585 to 3,489,679 _2998 Pf6N2E2_2999 - probable tail fiber assembly protein, at 3,489,708 to 3,490,217 _2999 Pf6N2E2_3000 - Prophage tail fiber protein, at 3,490,214 to 3,491,377 _3000 Position (kb) 3489 3490 3491Strain fitness (log2 ratio) -2 -1 0 1 2at 3488.827 kb on + strand, within Pf6N2E2_2998at 3488.828 kb on - strand, within Pf6N2E2_2998at 3488.934 kb on - strand, within Pf6N2E2_2998at 3489.124 kb on + strand, within Pf6N2E2_2998at 3489.124 kb on + strand, within Pf6N2E2_2998at 3489.124 kb on + strand, within Pf6N2E2_2998at 3489.125 kb on - strand, within Pf6N2E2_2998at 3489.125 kb on - strand, within Pf6N2E2_2998at 3489.200 kb on + strand, within Pf6N2E2_2998at 3489.200 kb on + strand, within Pf6N2E2_2998at 3489.200 kb on + strand, within Pf6N2E2_2998at 3489.200 kb on + strand, within Pf6N2E2_2998at 3489.201 kb on - strand, within Pf6N2E2_2998at 3489.203 kb on + strand, within Pf6N2E2_2998at 3489.203 kb on + strand, within Pf6N2E2_2998at 3489.203 kb on + strand, within Pf6N2E2_2998at 3489.204 kb on - strand, within Pf6N2E2_2998at 3489.204 kb on - strand, within Pf6N2E2_2998at 3489.204 kb on - strand, within Pf6N2E2_2998at 3489.208 kb on + strand, within Pf6N2E2_2998at 3489.208 kb on + strand, within Pf6N2E2_2998at 3489.208 kb on + strand, within Pf6N2E2_2998at 3489.209 kb on - strand, within Pf6N2E2_2998at 3489.209 kb on - strand, within Pf6N2E2_2998at 3489.389 kb on + strand, within Pf6N2E2_2998at 3489.390 kb on - strand, within Pf6N2E2_2998at 3489.440 kb on - strand, within Pf6N2E2_2998at 3489.455 kb on - strand, within Pf6N2E2_2998at 3489.684 kb on + strandat 3489.685 kb on - strandat 3489.695 kb on + strandat 3489.695 kb on + strandat 3489.696 kb on - strandat 3490.000 kb on + strand, within Pf6N2E2_2999at 3490.000 kb on + strand, within Pf6N2E2_2999at 3490.096 kb on - strand, within Pf6N2E2_2999at 3490.149 kb on - strand, within Pf6N2E2_2999at 3490.189 kb on + strandat 3490.189 kb on + strandat 3490.190 kb on - strandat 3490.259 kb on - strandat 3490.259 kb on - strandat 3490.274 kb on - strandat 3490.429 kb on + strand, within Pf6N2E2_3000at 3490.438 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strandat 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.477 kb on + strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.478 kb on - strand, within Pf6N2E2_3000at 3490.479 kb on + strand, within Pf6N2E2_3000at 3490.522 kb on + strand, within Pf6N2E2_3000at 3490.522 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.545 kb on + strand, within Pf6N2E2_3000at 3490.546 kb on - strand, within Pf6N2E2_3000at 3490.546 kb on - strand, within Pf6N2E2_3000at 3490.546 kb on - strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.551 kb on + strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.552 kb on - strand, within Pf6N2E2_3000at 3490.668 kb on + strand, within Pf6N2E2_3000at 3490.669 kb on - strand, within Pf6N2E2_3000at 3490.669 kb on - strand, within Pf6N2E2_3000at 3490.688 kb on + strand, within Pf6N2E2_3000at 3490.688 kb on + strand, within Pf6N2E2_3000at 3490.689 kb on - strand, within Pf6N2E2_3000at 3490.722 kb on + strand, within Pf6N2E2_3000at 3490.722 kb on + strand, within Pf6N2E2_3000at 3490.722 kb on + strand, within Pf6N2E2_3000at 3490.723 kb on - strand, within Pf6N2E2_3000at 3490.723 kb on - strand, within Pf6N2E2_3000at 3490.723 kb on - strand, within Pf6N2E2_3000at 3490.860 kb on + strand, within Pf6N2E2_3000at 3490.860 kb on + strand, within Pf6N2E2_3000at 3490.861 kb on - strand, within Pf6N2E2_3000at 3490.861 kb on - strand, within Pf6N2E2_3000at 3490.879 kb on + strand, within Pf6N2E2_3000at 3490.879 kb on + strand, within Pf6N2E2_3000at 3490.880 kb on - strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.881 kb on + strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.882 kb on - strand, within Pf6N2E2_3000at 3490.923 kb on + strand, within Pf6N2E2_3000at 3490.924 kb on - strand, within Pf6N2E2_3000at 3490.924 kb on - strand, within Pf6N2E2_3000at 3490.971 kb on + strand, within Pf6N2E2_3000at 3490.971 kb on + strand, within Pf6N2E2_3000at 3490.971 kb on + strand, within Pf6N2E2_3000at 3490.972 kb on - strand, within Pf6N2E2_3000at 3490.976 kb on - strand, within Pf6N2E2_3000at 3490.976 kb on - strand, within Pf6N2E2_3000at 3491.000 kb on + strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.001 kb on - strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.025 kb on + strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000at 3491.026 kb on - strand, within Pf6N2E2_3000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydrochloric Acid 0.005 M
remove
3,488,827 + Pf6N2E2_2998 0.22 +0.2
3,488,828 - Pf6N2E2_2998 0.22 +0.4
3,488,934 - Pf6N2E2_2998 0.32 +1.2
3,489,124 + Pf6N2E2_2998 0.49 -1.1
3,489,124 + Pf6N2E2_2998 0.49 -0.6
3,489,124 + Pf6N2E2_2998 0.49 -0.4
3,489,125 - Pf6N2E2_2998 0.49 +0.2
3,489,125 - Pf6N2E2_2998 0.49 -0.1
3,489,200 + Pf6N2E2_2998 0.56 -0.5
3,489,200 + Pf6N2E2_2998 0.56 -0.3
3,489,200 + Pf6N2E2_2998 0.56 +0.5
3,489,200 + Pf6N2E2_2998 0.56 +1.8
3,489,201 - Pf6N2E2_2998 0.56 +0.2
3,489,203 + Pf6N2E2_2998 0.56 +0.1
3,489,203 + Pf6N2E2_2998 0.56 +0.8
3,489,203 + Pf6N2E2_2998 0.56 -0.1
3,489,204 - Pf6N2E2_2998 0.57 +0.2
3,489,204 - Pf6N2E2_2998 0.57 -0.9
3,489,204 - Pf6N2E2_2998 0.57 -1.0
3,489,208 + Pf6N2E2_2998 0.57 -0.9
3,489,208 + Pf6N2E2_2998 0.57 -0.6
3,489,208 + Pf6N2E2_2998 0.57 -0.1
3,489,209 - Pf6N2E2_2998 0.57 -0.8
3,489,209 - Pf6N2E2_2998 0.57 -0.1
3,489,389 + Pf6N2E2_2998 0.73 +0.1
3,489,390 - Pf6N2E2_2998 0.74 +0.7
3,489,440 - Pf6N2E2_2998 0.78 +0.5
3,489,455 - Pf6N2E2_2998 0.79 +0.5
3,489,684 + -0.4
3,489,685 - -0.4
3,489,695 + +2.1
3,489,695 + +1.1
3,489,696 - -0.1
3,490,000 + Pf6N2E2_2999 0.57 +0.5
3,490,000 + Pf6N2E2_2999 0.57 -0.9
3,490,096 - Pf6N2E2_2999 0.76 -0.2
3,490,149 - Pf6N2E2_2999 0.86 -0.9
3,490,189 + +0.9
3,490,189 + -2.4
3,490,190 - -1.8
3,490,259 - -0.8
3,490,259 - +1.0
3,490,274 - -2.2
3,490,429 + Pf6N2E2_3000 0.18 +0.8
3,490,438 + Pf6N2E2_3000 0.19 +0.7
3,490,477 + Pf6N2E2_3000 0.23 +1.1
3,490,477 + Pf6N2E2_3000 0.23 -2.4
3,490,477 + Pf6N2E2_3000 0.23 -1.5
3,490,477 + Pf6N2E2_3000 0.23 +0.1
3,490,477 + Pf6N2E2_3000 0.23 +0.4
3,490,477 + Pf6N2E2_3000 0.23 +0.3
3,490,477 + -0.2
3,490,477 + Pf6N2E2_3000 0.23 +0.1
3,490,477 + Pf6N2E2_3000 0.23 +0.8
3,490,477 + Pf6N2E2_3000 0.23 -0.3
3,490,477 + Pf6N2E2_3000 0.23 +0.2
3,490,477 + Pf6N2E2_3000 0.23 +0.7
3,490,477 + Pf6N2E2_3000 0.23 +0.3
3,490,477 + Pf6N2E2_3000 0.23 -0.4
3,490,478 - Pf6N2E2_3000 0.23 +0.1
3,490,478 - Pf6N2E2_3000 0.23 +1.3
3,490,478 - Pf6N2E2_3000 0.23 +0.9
3,490,478 - Pf6N2E2_3000 0.23 -0.2
3,490,478 - Pf6N2E2_3000 0.23 +0.4
3,490,478 - Pf6N2E2_3000 0.23 +0.1
3,490,478 - Pf6N2E2_3000 0.23 +0.3
3,490,478 - Pf6N2E2_3000 0.23 -0.3
3,490,478 - Pf6N2E2_3000 0.23 +0.3
3,490,478 - Pf6N2E2_3000 0.23 -0.3
3,490,478 - Pf6N2E2_3000 0.23 -1.1
3,490,478 - Pf6N2E2_3000 0.23 -0.2
3,490,478 - Pf6N2E2_3000 0.23 -0.9
3,490,478 - Pf6N2E2_3000 0.23 -0.2
3,490,479 + Pf6N2E2_3000 0.23 +0.4
3,490,522 + Pf6N2E2_3000 0.26 -0.5
3,490,522 + Pf6N2E2_3000 0.26 +0.7
3,490,545 + Pf6N2E2_3000 0.28 -0.6
3,490,545 + Pf6N2E2_3000 0.28 -0.8
3,490,545 + Pf6N2E2_3000 0.28 -0.6
3,490,545 + Pf6N2E2_3000 0.28 -0.2
3,490,545 + Pf6N2E2_3000 0.28 +0.6
3,490,545 + Pf6N2E2_3000 0.28 -0.7
3,490,545 + Pf6N2E2_3000 0.28 -0.1
3,490,545 + Pf6N2E2_3000 0.28 +0.2
3,490,545 + Pf6N2E2_3000 0.28 +1.8
3,490,546 - Pf6N2E2_3000 0.29 +0.1
3,490,546 - Pf6N2E2_3000 0.29 +0.9
3,490,546 - Pf6N2E2_3000 0.29 -1.9
3,490,551 + Pf6N2E2_3000 0.29 +1.7
3,490,551 + Pf6N2E2_3000 0.29 +0.4
3,490,551 + Pf6N2E2_3000 0.29 +0.3
3,490,551 + Pf6N2E2_3000 0.29 -1.6
3,490,551 + Pf6N2E2_3000 0.29 -0.4
3,490,551 + Pf6N2E2_3000 0.29 -0.6
3,490,551 + Pf6N2E2_3000 0.29 +0.2
3,490,551 + Pf6N2E2_3000 0.29 -1.1
3,490,551 + Pf6N2E2_3000 0.29 +0.2
3,490,552 - Pf6N2E2_3000 0.29 +0.1
3,490,552 - Pf6N2E2_3000 0.29 -0.9
3,490,552 - Pf6N2E2_3000 0.29 -0.0
3,490,552 - Pf6N2E2_3000 0.29 -1.7
3,490,668 + Pf6N2E2_3000 0.39 +0.8
3,490,669 - Pf6N2E2_3000 0.39 +1.0
3,490,669 - Pf6N2E2_3000 0.39 +0.4
3,490,688 + Pf6N2E2_3000 0.41 +0.5
3,490,688 + Pf6N2E2_3000 0.41 -0.2
3,490,689 - Pf6N2E2_3000 0.41 -0.2
3,490,722 + Pf6N2E2_3000 0.44 -0.5
3,490,722 + Pf6N2E2_3000 0.44 -1.2
3,490,722 + Pf6N2E2_3000 0.44 +1.8
3,490,723 - Pf6N2E2_3000 0.44 +0.5
3,490,723 - Pf6N2E2_3000 0.44 -0.8
3,490,723 - Pf6N2E2_3000 0.44 -0.1
3,490,860 + Pf6N2E2_3000 0.55 -0.6
3,490,860 + Pf6N2E2_3000 0.55 +0.7
3,490,861 - Pf6N2E2_3000 0.56 +0.1
3,490,861 - Pf6N2E2_3000 0.56 +0.2
3,490,879 + Pf6N2E2_3000 0.57 +1.6
3,490,879 + Pf6N2E2_3000 0.57 +0.6
3,490,880 - Pf6N2E2_3000 0.57 -0.2
3,490,881 + Pf6N2E2_3000 0.57 +1.5
3,490,881 + Pf6N2E2_3000 0.57 +0.6
3,490,881 + Pf6N2E2_3000 0.57 -0.7
3,490,881 + Pf6N2E2_3000 0.57 +1.8
3,490,882 - Pf6N2E2_3000 0.57 +0.8
3,490,882 - Pf6N2E2_3000 0.57 -0.2
3,490,882 - Pf6N2E2_3000 0.57 +0.3
3,490,882 - Pf6N2E2_3000 0.57 -0.6
3,490,882 - Pf6N2E2_3000 0.57 +0.8
3,490,882 - Pf6N2E2_3000 0.57 +1.4
3,490,882 - Pf6N2E2_3000 0.57 -0.7
3,490,923 + Pf6N2E2_3000 0.61 +0.6
3,490,924 - Pf6N2E2_3000 0.61 +1.1
3,490,924 - Pf6N2E2_3000 0.61 -0.0
3,490,971 + Pf6N2E2_3000 0.65 -0.7
3,490,971 + Pf6N2E2_3000 0.65 +1.4
3,490,971 + Pf6N2E2_3000 0.65 -0.5
3,490,972 - Pf6N2E2_3000 0.65 -0.8
3,490,976 - Pf6N2E2_3000 0.65 +0.5
3,490,976 - Pf6N2E2_3000 0.65 -0.5
3,491,000 + Pf6N2E2_3000 0.68 +0.2
3,491,001 - Pf6N2E2_3000 0.68 -1.5
3,491,001 - Pf6N2E2_3000 0.68 +0.0
3,491,001 - Pf6N2E2_3000 0.68 -0.2
3,491,001 - Pf6N2E2_3000 0.68 +0.2
3,491,001 - Pf6N2E2_3000 0.68 +0.2
3,491,001 - Pf6N2E2_3000 0.68 -0.6
3,491,001 - Pf6N2E2_3000 0.68 -0.7
3,491,025 + Pf6N2E2_3000 0.70 +0.8
3,491,025 + Pf6N2E2_3000 0.70 +0.4
3,491,025 + Pf6N2E2_3000 0.70 -1.9
3,491,025 + Pf6N2E2_3000 0.70 -0.1
3,491,026 - Pf6N2E2_3000 0.70 -0.5
3,491,026 - Pf6N2E2_3000 0.70 +0.2
3,491,026 - Pf6N2E2_3000 0.70 +2.0
3,491,026 - Pf6N2E2_3000 0.70 +0.8
3,491,026 - Pf6N2E2_3000 0.70 +1.6
3,491,026 - Pf6N2E2_3000 0.70 -1.0

Or see this region's nucleotide sequence