Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_125

Experiment: Hydrochloric Acid 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_124 and Pf6N2E2_125 overlap by 4 nucleotidesPf6N2E2_125 and Pf6N2E2_126 are separated by 376 nucleotides Pf6N2E2_124 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 171,231 to 172,310 _124 Pf6N2E2_125 - UDP-glucose dehydrogenase (EC 1.1.1.22), at 172,307 to 173,671 _125 Pf6N2E2_126 - FIG00960892: hypothetical protein, at 174,048 to 175,745 _126 Position (kb) 172 173 174Strain fitness (log2 ratio) -2 -1 0 1 2at 171.313 kb on + strandat 171.313 kb on + strandat 171.493 kb on + strand, within Pf6N2E2_124at 171.493 kb on + strand, within Pf6N2E2_124at 171.493 kb on + strand, within Pf6N2E2_124at 171.532 kb on + strand, within Pf6N2E2_124at 171.533 kb on - strand, within Pf6N2E2_124at 171.649 kb on + strand, within Pf6N2E2_124at 171.649 kb on + strand, within Pf6N2E2_124at 171.811 kb on + strand, within Pf6N2E2_124at 171.811 kb on + strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.812 kb on - strand, within Pf6N2E2_124at 171.916 kb on + strand, within Pf6N2E2_124at 171.916 kb on + strand, within Pf6N2E2_124at 171.917 kb on - strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.937 kb on + strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 171.981 kb on - strand, within Pf6N2E2_124at 172.012 kb on + strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.013 kb on - strand, within Pf6N2E2_124at 172.071 kb on + strand, within Pf6N2E2_124at 172.202 kb on - strand, within Pf6N2E2_124at 172.204 kb on + strandat 172.404 kb on + strandat 172.405 kb on - strandat 172.405 kb on - strandat 172.455 kb on - strand, within Pf6N2E2_125at 172.569 kb on + strand, within Pf6N2E2_125at 172.605 kb on + strand, within Pf6N2E2_125at 172.768 kb on + strand, within Pf6N2E2_125at 172.899 kb on + strand, within Pf6N2E2_125at 173.106 kb on + strand, within Pf6N2E2_125at 173.106 kb on + strand, within Pf6N2E2_125at 173.228 kb on + strand, within Pf6N2E2_125at 173.644 kb on - strandat 173.644 kb on - strandat 173.644 kb on - strandat 173.657 kb on + strandat 173.657 kb on + strandat 173.657 kb on + strandat 173.657 kb on + strandat 173.701 kb on + strandat 173.702 kb on - strandat 173.720 kb on + strandat 174.084 kb on + strandat 174.105 kb on + strandat 174.108 kb on + strandat 174.108 kb on + strandat 174.109 kb on - strandat 174.204 kb on + strandat 174.204 kb on + strandat 174.205 kb on - strandat 174.209 kb on - strandat 174.209 kb on - strandat 174.209 kb on - strandat 174.209 kb on - strandat 174.209 kb on - strandat 174.209 kb on - strandat 174.276 kb on + strand, within Pf6N2E2_126at 174.276 kb on + strand, within Pf6N2E2_126at 174.276 kb on + strand, within Pf6N2E2_126at 174.276 kb on + strand, within Pf6N2E2_126at 174.277 kb on - strand, within Pf6N2E2_126at 174.277 kb on - strand, within Pf6N2E2_126at 174.298 kb on - strand, within Pf6N2E2_126at 174.298 kb on - strand, within Pf6N2E2_126at 174.306 kb on + strand, within Pf6N2E2_126at 174.306 kb on + strand, within Pf6N2E2_126at 174.306 kb on + strand, within Pf6N2E2_126at 174.306 kb on + strand, within Pf6N2E2_126at 174.306 kb on + strand, within Pf6N2E2_126at 174.307 kb on - strand, within Pf6N2E2_126at 174.307 kb on - strand, within Pf6N2E2_126at 174.307 kb on - strand, within Pf6N2E2_126at 174.307 kb on - strand, within Pf6N2E2_126at 174.308 kb on + strand, within Pf6N2E2_126at 174.309 kb on - strand, within Pf6N2E2_126at 174.330 kb on + strand, within Pf6N2E2_126at 174.344 kb on + strand, within Pf6N2E2_126at 174.360 kb on + strand, within Pf6N2E2_126at 174.361 kb on - strand, within Pf6N2E2_126at 174.412 kb on + strand, within Pf6N2E2_126at 174.413 kb on - strand, within Pf6N2E2_126at 174.460 kb on - strand, within Pf6N2E2_126at 174.460 kb on - strand, within Pf6N2E2_126at 174.555 kb on + strand, within Pf6N2E2_126at 174.555 kb on + strand, within Pf6N2E2_126at 174.555 kb on + strand, within Pf6N2E2_126at 174.555 kb on + strand, within Pf6N2E2_126at 174.556 kb on - strand, within Pf6N2E2_126at 174.556 kb on - strand, within Pf6N2E2_126

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydrochloric Acid 0.005 M
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171,313 + -0.2
171,313 + +1.3
171,493 + Pf6N2E2_124 0.24 -0.0
171,493 + Pf6N2E2_124 0.24 -0.3
171,493 + Pf6N2E2_124 0.24 -1.9
171,532 + Pf6N2E2_124 0.28 -1.5
171,533 - Pf6N2E2_124 0.28 +0.5
171,649 + Pf6N2E2_124 0.39 -0.5
171,649 + Pf6N2E2_124 0.39 -0.0
171,811 + Pf6N2E2_124 0.54 +0.7
171,811 + Pf6N2E2_124 0.54 -0.9
171,812 - Pf6N2E2_124 0.54 -0.5
171,812 - Pf6N2E2_124 0.54 -0.6
171,812 - Pf6N2E2_124 0.54 -0.6
171,812 - Pf6N2E2_124 0.54 +0.7
171,812 - Pf6N2E2_124 0.54 -0.7
171,916 + Pf6N2E2_124 0.63 +0.2
171,916 + Pf6N2E2_124 0.63 +0.3
171,917 - Pf6N2E2_124 0.64 +0.4
171,937 + Pf6N2E2_124 0.65 -0.6
171,937 + Pf6N2E2_124 0.65 -0.6
171,937 + Pf6N2E2_124 0.65 -0.6
171,937 + Pf6N2E2_124 0.65 +0.3
171,937 + Pf6N2E2_124 0.65 +0.1
171,937 + Pf6N2E2_124 0.65 +0.2
171,981 - Pf6N2E2_124 0.69 -2.7
171,981 - Pf6N2E2_124 0.69 +1.1
171,981 - Pf6N2E2_124 0.69 -0.6
171,981 - Pf6N2E2_124 0.69 -1.4
171,981 - Pf6N2E2_124 0.69 +1.7
172,012 + Pf6N2E2_124 0.72 -1.6
172,013 - Pf6N2E2_124 0.72 -1.0
172,013 - Pf6N2E2_124 0.72 -0.1
172,013 - Pf6N2E2_124 0.72 -0.1
172,013 - Pf6N2E2_124 0.72 -0.4
172,013 - Pf6N2E2_124 0.72 -0.9
172,071 + Pf6N2E2_124 0.78 -0.3
172,202 - Pf6N2E2_124 0.90 -0.6
172,204 + -1.3
172,404 + -1.3
172,405 - +0.3
172,405 - -0.8
172,455 - Pf6N2E2_125 0.11 -0.3
172,569 + Pf6N2E2_125 0.19 -0.6
172,605 + Pf6N2E2_125 0.22 -0.3
172,768 + Pf6N2E2_125 0.34 -0.6
172,899 + Pf6N2E2_125 0.43 +0.7
173,106 + Pf6N2E2_125 0.59 -0.3
173,106 + Pf6N2E2_125 0.59 -0.9
173,228 + Pf6N2E2_125 0.67 -0.6
173,644 - +0.2
173,644 - -0.9
173,644 - +0.8
173,657 + +0.1
173,657 + +1.0
173,657 + -0.2
173,657 + +0.7
173,701 + -0.5
173,702 - +0.8
173,720 + +0.2
174,084 + +1.1
174,105 + +0.0
174,108 + -0.7
174,108 + -0.5
174,109 - -1.1
174,204 + +0.1
174,204 + -0.1
174,205 - +0.2
174,209 - -1.1
174,209 - +0.1
174,209 - +0.1
174,209 - +0.2
174,209 - -0.0
174,209 - +0.6
174,276 + Pf6N2E2_126 0.13 -0.1
174,276 + Pf6N2E2_126 0.13 +0.3
174,276 + Pf6N2E2_126 0.13 +0.3
174,276 + Pf6N2E2_126 0.13 +1.3
174,277 - Pf6N2E2_126 0.13 +0.8
174,277 - Pf6N2E2_126 0.13 -1.1
174,298 - Pf6N2E2_126 0.15 -1.3
174,298 - Pf6N2E2_126 0.15 +0.8
174,306 + Pf6N2E2_126 0.15 -0.3
174,306 + Pf6N2E2_126 0.15 -0.3
174,306 + Pf6N2E2_126 0.15 -0.7
174,306 + Pf6N2E2_126 0.15 -0.0
174,306 + Pf6N2E2_126 0.15 -0.0
174,307 - Pf6N2E2_126 0.15 +1.3
174,307 - Pf6N2E2_126 0.15 +0.6
174,307 - Pf6N2E2_126 0.15 -0.5
174,307 - Pf6N2E2_126 0.15 -2.1
174,308 + Pf6N2E2_126 0.15 -1.2
174,309 - Pf6N2E2_126 0.15 -1.3
174,330 + Pf6N2E2_126 0.17 +1.0
174,344 + Pf6N2E2_126 0.17 -1.5
174,360 + Pf6N2E2_126 0.18 +0.3
174,361 - Pf6N2E2_126 0.18 -0.4
174,412 + Pf6N2E2_126 0.21 -0.1
174,413 - Pf6N2E2_126 0.21 -0.3
174,460 - Pf6N2E2_126 0.24 +1.3
174,460 - Pf6N2E2_126 0.24 +2.7
174,555 + Pf6N2E2_126 0.30 +0.5
174,555 + Pf6N2E2_126 0.30 +1.5
174,555 + Pf6N2E2_126 0.30 +1.4
174,555 + Pf6N2E2_126 0.30 -0.3
174,556 - Pf6N2E2_126 0.30 -0.7
174,556 - Pf6N2E2_126 0.30 -0.7

Or see this region's nucleotide sequence