Strain Fitness in Pantoea sp. MT58 around IAI47_21750

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
92,878	+		IAI47_21745	0.42	-2.0
92,879	-		IAI47_21745	0.42	-2.2
92,897	+		IAI47_21745	0.43	-1.9
92,897	+		IAI47_21745	0.43	-1.2
92,898	-		IAI47_21745	0.43	-1.8
92,898	-		IAI47_21745	0.43	+2.8
92,898	-		IAI47_21745	0.43	+2.4
92,962	+		IAI47_21745	0.47	-1.0
92,962	+		IAI47_21745	0.47	+0.2
92,962	+		IAI47_21745	0.47	-1.2
92,966	-		IAI47_21745	0.47	+0.9
92,966	-		IAI47_21745	0.47	-0.3
93,021	-		IAI47_21745	0.50	-0.1
93,035	+		IAI47_21745	0.51	-0.9
93,035	+		IAI47_21745	0.51	+3.4
93,035	+		IAI47_21745	0.51	-0.2
93,036	-		IAI47_21745	0.51	-1.4
93,036	-		IAI47_21745	0.51	-1.4
93,036	-		IAI47_21745	0.51	-0.7
93,114	-		IAI47_21745	0.56	-0.3
93,161	-		IAI47_21745	0.59	-2.4
93,175	+		IAI47_21745	0.60	+1.8
93,176	-		IAI47_21745	0.60	+3.3
93,178	+		IAI47_21745	0.60	+0.4
93,179	-		IAI47_21745	0.60	-3.1
93,179	-		IAI47_21745	0.60	+0.3
93,179	-		IAI47_21745	0.60	-0.9
93,214	+		IAI47_21745	0.62	+0.6
93,214	+		IAI47_21745	0.62	-0.4
93,214	+		IAI47_21745	0.62	-2.0
93,214	+		IAI47_21745	0.62	-2.2
93,215	-		IAI47_21745	0.62	-2.2
93,215	-		IAI47_21745	0.62	+1.4
93,215	-		IAI47_21745	0.62	+1.9
93,215	-		IAI47_21745	0.62	-0.7
93,215	-		IAI47_21745	0.62	-0.4
93,215	-		IAI47_21745	0.62	-2.5
93,247	-		IAI47_21745	0.64	-1.4
93,322	+		IAI47_21745	0.68	+0.6
93,322	+		IAI47_21745	0.68	+3.1
93,322	+		IAI47_21745	0.68	+0.6
93,322	+		IAI47_21745	0.68	+1.3
93,322	+		IAI47_21745	0.68	-1.2
93,322	+		IAI47_21745	0.68	-1.7
93,322	+		IAI47_21745	0.68	-1.2
93,322	+		IAI47_21745	0.68	+2.0
93,323	-		IAI47_21745	0.68	-0.4
93,323	-		IAI47_21745	0.68	+0.3
93,323	-		IAI47_21745	0.68	-2.1
93,323	-		IAI47_21745	0.68	-0.1
93,325	+		IAI47_21745	0.69	+2.6
93,325	+		IAI47_21745	0.69	-0.9
93,326	-		IAI47_21745	0.69	+0.8
93,326	-		IAI47_21745	0.69	-1.1
93,326	-		IAI47_21745	0.69	+1.1
93,352	+		IAI47_21745	0.70	+1.2
93,352	+		IAI47_21745	0.70	-2.5
93,358	+		IAI47_21745	0.70	+3.7
93,358	+		IAI47_21745	0.70	-2.2
93,358	+		IAI47_21745	0.70	+1.1
93,358	+		IAI47_21745	0.70	+2.7
93,358	+		IAI47_21745	0.70	-0.5
93,359	-		IAI47_21745	0.71	+4.3
93,384	-		IAI47_21745	0.72	+0.6
93,389	+		IAI47_21745	0.72	-0.6
93,389	+		IAI47_21745	0.72	-0.9
93,571	+		IAI47_21745	0.83	-2.7
93,572	-		IAI47_21745	0.83	+0.9
93,572	-		IAI47_21745	0.83	-3.1
93,602	+		IAI47_21745	0.85	+3.3
93,602	+		IAI47_21745	0.85	+1.0
93,602	+		IAI47_21745	0.85	-1.4
93,603	-		IAI47_21745	0.85	-0.7
93,635	+		IAI47_21745	0.87	-1.2
93,676	+		IAI47_21745	0.89	-2.4
93,683	+		IAI47_21745	0.90	+1.3
93,742	+				+0.6
93,800	+				-0.7
93,800	+				+0.8
93,800	+				-0.9
93,800	+				+2.6
93,801	-				-2.4
93,801	-				+0.7
93,801	-				+0.5
93,851	+				+0.9
93,851	+				+2.9
93,851	+				+1.2
93,851	+				+0.3
93,852	-				+2.6
93,861	+				-0.1
93,862	-				+0.8
93,862	-				-0.7
94,040	+		IAI47_21750	0.21	-1.2
94,041	-		IAI47_21750	0.21	+2.3
94,143	+		IAI47_21750	0.34	+1.9
94,143	+		IAI47_21750	0.34	+1.1
94,143	+		IAI47_21750	0.34	-0.4
94,143	+		IAI47_21750	0.34	-0.2
94,144	-		IAI47_21750	0.34	+3.3
94,144	-		IAI47_21750	0.34	-0.3
94,144	-		IAI47_21750	0.34	+0.7
94,144	-		IAI47_21750	0.34	+1.1
94,144	-		IAI47_21750	0.34	-2.0
94,198	+		IAI47_21750	0.41	-0.1
94,198	+		IAI47_21750	0.41	-2.6
94,198	+		IAI47_21750	0.41	+0.3
94,198	+		IAI47_21750	0.41	-1.7
94,198	+		IAI47_21750	0.41	+1.4
94,199	-		IAI47_21750	0.42	+1.4
94,199	-		IAI47_21750	0.42	-0.7
94,199	-		IAI47_21750	0.42	-1.0
94,199	-		IAI47_21750	0.42	+2.5
94,230	+		IAI47_21750	0.46	-1.2
94,231	-		IAI47_21750	0.46	+0.9
94,245	+		IAI47_21750	0.48	-2.2
94,409	+		IAI47_21750	0.69	+2.9
94,409	+		IAI47_21750	0.69	+0.6
94,409	+		IAI47_21750	0.69	-1.7
94,409	+		IAI47_21750	0.69	+0.0
94,410	-		IAI47_21750	0.69	-1.1
94,410	-		IAI47_21750	0.69	+6.1
94,410	-		IAI47_21750	0.69	-1.7
94,524	+		IAI47_21750	0.84	+1.1
94,524	+		IAI47_21750	0.84	-2.0
94,524	+		IAI47_21750	0.84	-1.1
94,525	-		IAI47_21750	0.84	-1.4
94,527	+		IAI47_21750	0.84	-0.1
94,527	+		IAI47_21750	0.84	+3.6
94,527	+		IAI47_21750	0.84	+2.9
94,528	-		IAI47_21750	0.84	+3.7
94,528	-		IAI47_21750	0.84	+1.9
94,528	-		IAI47_21750	0.84	-2.2
94,528	-		IAI47_21750	0.84	+1.2
94,576	+				+0.3
94,576	+				-0.1
94,576	+				-1.2
94,576	+				-0.2
94,576	+				+2.3
94,577	-				+0.3
94,600	+				-3.2
94,601	-				+2.7
94,601	-				-2.7
94,644	+				-1.4
94,644	+				-2.3
94,644	+				+0.3
94,644	+				-0.4
94,644	+				-0.4
94,645	-				+2.1
94,712	-				+0.7
94,712	-				+0.9
94,759	+				-2.5
94,759	+				-0.2
94,759	+				+1.3
94,759	+				+0.3
94,759	+				+0.7
94,759	+				-3.1
94,759	+				+1.0
94,760	-				+1.9
94,760	-				-0.9
94,760	-				+5.5
94,760	-				-1.5
94,760	-				-2.5
94,760	-				-1.4
94,807	+				+3.7
94,807	+				-1.1
94,808	-				-0.6
94,808	-				-0.1
94,808	-				-1.9
94,811	-				+0.3
94,811	-				+2.4
94,846	+				+1.3
94,846	+				+1.0
94,873	+				+0.9
94,907	+				+0.9
94,908	-				+1.3
94,947	+				+2.5
94,947	+				-0.9
94,966	+				+0.3
94,966	+				-1.1
94,967	-				-0.1
95,024	-		IAI47_21755	0.12	-1.1
95,044	-		IAI47_21755	0.13	-1.9
95,065	+		IAI47_21755	0.14	-1.2
95,065	+		IAI47_21755	0.14	+0.0
95,066	-		IAI47_21755	0.14	-1.5
95,072	+		IAI47_21755	0.15	+1.7
95,072	+		IAI47_21755	0.15	-0.7
95,072	+		IAI47_21755	0.15	-1.9
95,072	+		IAI47_21755	0.15	-0.8
95,073	-		IAI47_21755	0.15	+0.8
95,101	+		IAI47_21755	0.17	+2.2
95,101	+		IAI47_21755	0.17	-1.2
95,101	+		IAI47_21755	0.17	-1.4
95,102	-		IAI47_21755	0.17	-3.0
95,102	-		IAI47_21755	0.17	+5.6
95,198	+		IAI47_21755	0.24	-2.2
95,198	+		IAI47_21755	0.24	+2.6
95,198	+		IAI47_21755	0.24	+1.6
95,198	+		IAI47_21755	0.24	-0.9
95,199	-		IAI47_21755	0.24	-2.5
95,199	-		IAI47_21755	0.24	+1.2
95,199	-		IAI47_21755	0.24	-2.2
95,199	-		IAI47_21755	0.24	+0.9
95,199	-		IAI47_21755	0.24	-2.2
95,275	+		IAI47_21755	0.29	-2.1
95,276	-		IAI47_21755	0.29	-0.1
95,276	-		IAI47_21755	0.29	+1.0
95,317	+		IAI47_21755	0.32	-1.8
95,317	+		IAI47_21755	0.32	-0.1
95,317	+		IAI47_21755	0.32	+0.3
95,352	-		IAI47_21755	0.34	-2.9
95,352	-		IAI47_21755	0.34	+1.1
95,359	+		IAI47_21755	0.35	+1.5
95,359	+		IAI47_21755	0.35	-1.9
95,360	-		IAI47_21755	0.35	-1.0
95,384	+		IAI47_21755	0.36	+3.3
95,385	-		IAI47_21755	0.36	+0.3
95,385	-		IAI47_21755	0.36	-1.4
95,385	-		IAI47_21755	0.36	-1.7
95,386	+		IAI47_21755	0.37	-1.9
95,386	+		IAI47_21755	0.37	+0.3
95,386	+		IAI47_21755	0.37	+0.8
95,386	+		IAI47_21755	0.37	-1.0
95,387	-		IAI47_21755	0.37	-0.9
95,387	-		IAI47_21755	0.37	+1.3
95,409	+		IAI47_21755	0.38	+2.5
95,409	+		IAI47_21755	0.38	+0.2
95,410	-		IAI47_21755	0.38	+5.2
95,470	+		IAI47_21755	0.42	-0.7
95,470	+		IAI47_21755	0.42	+1.6
95,470	+		IAI47_21755	0.42	+2.1
95,471	-		IAI47_21755	0.42	-1.5
95,485	+		IAI47_21755	0.43	+1.8
95,485	+		IAI47_21755	0.43	+0.3
95,485	+		IAI47_21755	0.43	+2.3
95,513	+		IAI47_21755	0.45	+4.0
95,513	+		IAI47_21755	0.45	+4.8
95,513	+		IAI47_21755	0.45	-1.9
95,513	+		IAI47_21755	0.45	-2.2
95,513	+		IAI47_21755	0.45	-1.5
95,514	-		IAI47_21755	0.45	+0.9
95,514	-		IAI47_21755	0.45	+2.2
95,514	-		IAI47_21755	0.45	-2.8
95,514	-		IAI47_21755	0.45	-1.9
95,557	+		IAI47_21755	0.48	+1.9
95,603	+		IAI47_21755	0.51	+1.3
95,603	+		IAI47_21755	0.51	+3.2
95,603	+		IAI47_21755	0.51	-1.9
95,603	+		IAI47_21755	0.51	+1.0
95,603	+		IAI47_21755	0.51	-0.1
95,604	-		IAI47_21755	0.52	+0.2
95,604	-		IAI47_21755	0.52	-2.4
95,604	-		IAI47_21755	0.52	+1.2
95,604	-		IAI47_21755	0.52	+0.7
95,604	-		IAI47_21755	0.52	-1.8
95,632	+		IAI47_21755	0.53	+2.9
95,632	+		IAI47_21755	0.53	-1.7
95,633	-		IAI47_21755	0.54	+1.9
95,633	-		IAI47_21755	0.54	-0.3