Strain Fitness in Pantoea sp. MT58 around IAI47_18915

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_18910 and IAI47_18915 are separated by 203 nucleotidesIAI47_18915 and IAI47_18920 are separated by 391 nucleotidesIAI47_18920 and IAI47_18925 overlap by 47 nucleotides IAI47_18910: IAI47_18910 - MCP four helix bundle domain-containing protein, at 19,001 to 20,554 _18910 IAI47_18915: IAI47_18915 - GNAT family N-acetyltransferase, at 20,758 to 21,312 _18915 IAI47_18920: IAI47_18920 - TetR/AcrR family transcriptional regulator, at 21,704 to 22,291 _18920 IAI47_18925: IAI47_18925 - LysR family transcriptional regulator, at 22,245 to 23,138 _18925 Position (kb) 20 21 22Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 19.759 kb on + strand, within IAI47_18910at 19.759 kb on + strand, within IAI47_18910at 19.759 kb on + strand, within IAI47_18910at 19.759 kb on + strand, within IAI47_18910at 19.760 kb on - strand, within IAI47_18910at 19.760 kb on - strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.762 kb on + strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.763 kb on - strand, within IAI47_18910at 19.942 kb on + strand, within IAI47_18910at 19.942 kb on + strand, within IAI47_18910at 19.943 kb on - strand, within IAI47_18910at 19.945 kb on + strand, within IAI47_18910at 19.945 kb on + strand, within IAI47_18910at 19.945 kb on + strand, within IAI47_18910at 19.946 kb on - strand, within IAI47_18910at 19.946 kb on - strand, within IAI47_18910at 20.047 kb on + strand, within IAI47_18910at 20.047 kb on + strand, within IAI47_18910at 20.047 kb on + strand, within IAI47_18910at 20.048 kb on - strand, within IAI47_18910at 20.048 kb on - strand, within IAI47_18910at 20.048 kb on - strand, within IAI47_18910at 20.089 kb on - strand, within IAI47_18910at 20.098 kb on + strand, within IAI47_18910at 20.098 kb on + strand, within IAI47_18910at 20.099 kb on - strand, within IAI47_18910at 20.099 kb on - strand, within IAI47_18910at 20.099 kb on - strand, within IAI47_18910at 20.113 kb on + strand, within IAI47_18910at 20.114 kb on - strand, within IAI47_18910at 20.114 kb on - strand, within IAI47_18910at 20.271 kb on + strand, within IAI47_18910at 20.271 kb on + strand, within IAI47_18910at 20.271 kb on + strand, within IAI47_18910at 20.272 kb on - strand, within IAI47_18910at 20.334 kb on + strand, within IAI47_18910at 20.334 kb on + strand, within IAI47_18910at 20.334 kb on + strand, within IAI47_18910at 20.335 kb on - strand, within IAI47_18910at 20.335 kb on - strand, within IAI47_18910at 20.359 kb on + strand, within IAI47_18910at 20.360 kb on - strand, within IAI47_18910at 20.362 kb on + strand, within IAI47_18910at 20.362 kb on + strand, within IAI47_18910at 20.362 kb on + strand, within IAI47_18910at 20.363 kb on - strand, within IAI47_18910at 20.363 kb on - strand, within IAI47_18910at 20.363 kb on - strand, within IAI47_18910at 20.552 kb on + strandat 20.552 kb on + strandat 20.552 kb on + strandat 20.553 kb on - strandat 20.553 kb on - strandat 20.553 kb on - strandat 20.553 kb on - strandat 20.566 kb on - strandat 20.572 kb on + strandat 20.573 kb on - strandat 20.606 kb on + strandat 20.606 kb on + strandat 20.617 kb on - strandat 20.617 kb on - strandat 20.720 kb on + strandat 20.720 kb on + strandat 20.721 kb on - strandat 20.721 kb on - strandat 20.721 kb on - strandat 20.728 kb on + strandat 20.739 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.743 kb on + strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.744 kb on - strandat 20.780 kb on + strandat 20.780 kb on + strandat 20.780 kb on + strandat 20.785 kb on + strandat 20.793 kb on + strandat 20.793 kb on + strandat 20.793 kb on + strandat 20.798 kb on + strandat 20.798 kb on + strandat 20.798 kb on + strandat 20.799 kb on - strandat 20.830 kb on + strand, within IAI47_18915at 20.830 kb on + strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.831 kb on - strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.850 kb on + strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.851 kb on - strand, within IAI47_18915at 20.857 kb on - strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.887 kb on + strand, within IAI47_18915at 20.888 kb on - strand, within IAI47_18915at 20.901 kb on + strand, within IAI47_18915at 20.901 kb on + strand, within IAI47_18915at 20.901 kb on + strand, within IAI47_18915at 20.902 kb on - strand, within IAI47_18915at 20.902 kb on - strand, within IAI47_18915at 20.902 kb on - strand, within IAI47_18915at 20.910 kb on + strand, within IAI47_18915at 20.910 kb on + strand, within IAI47_18915at 20.911 kb on - strand, within IAI47_18915at 20.911 kb on - strand, within IAI47_18915at 20.913 kb on - strand, within IAI47_18915at 20.913 kb on - strand, within IAI47_18915at 20.913 kb on - strand, within IAI47_18915at 20.924 kb on - strand, within IAI47_18915at 20.924 kb on - strand, within IAI47_18915at 20.954 kb on + strand, within IAI47_18915at 20.954 kb on + strand, within IAI47_18915at 20.955 kb on - strand, within IAI47_18915at 21.000 kb on - strand, within IAI47_18915at 21.000 kb on - strand, within IAI47_18915at 21.034 kb on - strand, within IAI47_18915at 21.076 kb on + strand, within IAI47_18915at 21.102 kb on + strand, within IAI47_18915at 21.103 kb on - strand, within IAI47_18915at 21.103 kb on - strand, within IAI47_18915at 21.103 kb on - strand, within IAI47_18915at 21.138 kb on + strand, within IAI47_18915at 21.139 kb on - strand, within IAI47_18915at 21.139 kb on - strand, within IAI47_18915at 21.150 kb on - strand, within IAI47_18915at 21.201 kb on - strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.253 kb on + strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.254 kb on - strand, within IAI47_18915at 21.255 kb on + strand, within IAI47_18915at 21.256 kb on - strand, within IAI47_18915at 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.321 kb on + strandat 21.322 kb on - strandat 21.322 kb on - strandat 21.322 kb on - strandat 21.322 kb on - strandat 21.323 kb on + strandat 21.323 kb on + strandat 21.323 kb on + strandat 21.323 kb on + strandat 21.324 kb on - strandat 21.324 kb on - strandat 21.416 kb on + strandat 21.417 kb on - strandat 21.421 kb on + strandat 21.430 kb on + strandat 21.431 kb on - strandat 21.446 kb on + strandat 21.446 kb on + strandat 21.446 kb on + strandat 21.446 kb on + strandat 21.447 kb on - strandat 21.447 kb on - strandat 21.447 kb on - strandat 21.453 kb on - strandat 21.496 kb on + strandat 21.497 kb on - strandat 21.499 kb on - strandat 21.536 kb on + strandat 21.536 kb on + strandat 21.536 kb on + strandat 21.536 kb on + strandat 21.537 kb on - strandat 21.564 kb on - strandat 21.579 kb on + strandat 21.580 kb on - strandat 21.594 kb on + strandat 21.594 kb on + strandat 21.595 kb on - strandat 21.630 kb on + strandat 21.667 kb on + strandat 21.745 kb on + strandat 21.745 kb on + strandat 21.746 kb on - strandat 21.746 kb on - strandat 21.746 kb on - strandat 21.746 kb on - strandat 21.763 kb on + strand, within IAI47_18920at 21.763 kb on + strand, within IAI47_18920at 21.763 kb on + strand, within IAI47_18920at 21.764 kb on - strand, within IAI47_18920at 21.780 kb on + strand, within IAI47_18920at 21.903 kb on + strand, within IAI47_18920at 21.937 kb on + strand, within IAI47_18920at 21.937 kb on + strand, within IAI47_18920at 21.938 kb on - strand, within IAI47_18920at 21.961 kb on + strand, within IAI47_18920at 21.961 kb on + strand, within IAI47_18920at 21.962 kb on - strand, within IAI47_18920at 21.962 kb on - strand, within IAI47_18920at 21.962 kb on - strand, within IAI47_18920at 22.000 kb on + strand, within IAI47_18920at 22.000 kb on + strand, within IAI47_18920at 22.001 kb on - strand, within IAI47_18920at 22.079 kb on + strand, within IAI47_18920at 22.079 kb on + strand, within IAI47_18920at 22.079 kb on + strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.080 kb on - strand, within IAI47_18920at 22.174 kb on + strand, within IAI47_18920at 22.174 kb on + strand, within IAI47_18920at 22.175 kb on - strand, within IAI47_18920at 22.175 kb on - strand, within IAI47_18920at 22.204 kb on + strand, within IAI47_18920at 22.246 kb on + strandat 22.247 kb on - strandat 22.310 kb on + strandat 22.310 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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19,759 + IAI47_18910 0.49 -2.0
19,759 + IAI47_18910 0.49 -0.6
19,759 + IAI47_18910 0.49 -2.4
19,759 + IAI47_18910 0.49 -1.7
19,760 - IAI47_18910 0.49 -1.7
19,760 - IAI47_18910 0.49 -1.4
19,762 + IAI47_18910 0.49 -1.7
19,762 + IAI47_18910 0.49 -0.4
19,762 + IAI47_18910 0.49 +1.9
19,762 + IAI47_18910 0.49 +0.7
19,762 + IAI47_18910 0.49 +1.8
19,762 + IAI47_18910 0.49 +1.0
19,762 + IAI47_18910 0.49 -0.3
19,762 + IAI47_18910 0.49 -1.0
19,763 - IAI47_18910 0.49 -1.6
19,763 - IAI47_18910 0.49 -2.1
19,763 - IAI47_18910 0.49 -1.1
19,763 - IAI47_18910 0.49 -2.1
19,763 - IAI47_18910 0.49 +1.3
19,763 - IAI47_18910 0.49 -0.8
19,763 - IAI47_18910 0.49 -0.6
19,763 - IAI47_18910 0.49 +0.4
19,763 - IAI47_18910 0.49 -2.0
19,763 - IAI47_18910 0.49 -0.3
19,763 - IAI47_18910 0.49 -0.8
19,942 + IAI47_18910 0.61 +1.3
19,942 + IAI47_18910 0.61 -0.8
19,943 - IAI47_18910 0.61 -1.1
19,945 + IAI47_18910 0.61 +1.3
19,945 + IAI47_18910 0.61 +0.5
19,945 + IAI47_18910 0.61 +0.0
19,946 - IAI47_18910 0.61 +0.7
19,946 - IAI47_18910 0.61 -2.3
20,047 + IAI47_18910 0.67 -0.8
20,047 + IAI47_18910 0.67 +1.2
20,047 + IAI47_18910 0.67 +2.6
20,048 - IAI47_18910 0.67 -0.3
20,048 - IAI47_18910 0.67 -0.6
20,048 - IAI47_18910 0.67 +3.4
20,089 - IAI47_18910 0.70 +1.5
20,098 + IAI47_18910 0.71 +2.6
20,098 + IAI47_18910 0.71 +1.4
20,099 - IAI47_18910 0.71 +0.2
20,099 - IAI47_18910 0.71 -1.4
20,099 - IAI47_18910 0.71 -0.3
20,113 + IAI47_18910 0.72 +1.0
20,114 - IAI47_18910 0.72 -2.8
20,114 - IAI47_18910 0.72 +2.3
20,271 + IAI47_18910 0.82 -0.3
20,271 + IAI47_18910 0.82 -2.6
20,271 + IAI47_18910 0.82 +3.1
20,272 - IAI47_18910 0.82 +0.0
20,334 + IAI47_18910 0.86 -0.3
20,334 + IAI47_18910 0.86 -0.1
20,334 + IAI47_18910 0.86 -2.0
20,335 - IAI47_18910 0.86 -1.8
20,335 - IAI47_18910 0.86 -1.0
20,359 + IAI47_18910 0.87 -0.6
20,360 - IAI47_18910 0.87 +1.1
20,362 + IAI47_18910 0.88 +4.0
20,362 + IAI47_18910 0.88 -2.7
20,362 + IAI47_18910 0.88 +0.0
20,363 - IAI47_18910 0.88 -0.1
20,363 - IAI47_18910 0.88 +0.6
20,363 - IAI47_18910 0.88 -0.6
20,552 + +1.9
20,552 + +0.4
20,552 + +0.8
20,553 - -2.7
20,553 - +0.4
20,553 - -0.3
20,553 - -0.1
20,566 - -1.7
20,572 + -1.0
20,573 - +0.0
20,606 + +1.0
20,606 + +1.3
20,617 - -1.8
20,617 - +1.0
20,720 + -0.8
20,720 + -1.3
20,721 - +0.7
20,721 - -1.1
20,721 - -2.8
20,728 + -0.3
20,739 + -2.3
20,743 + +0.1
20,743 + +0.3
20,743 + -0.4
20,743 + -1.4
20,743 + -1.0
20,744 - +1.3
20,744 - -1.1
20,744 - -0.0
20,780 + +0.9
20,780 + -1.0
20,780 + +0.7
20,785 + +0.7
20,793 + +2.0
20,793 + +0.9
20,793 + -2.3
20,798 + -0.4
20,798 + +0.6
20,798 + -2.0
20,799 - -0.8
20,830 + IAI47_18915 0.13 -1.3
20,830 + IAI47_18915 0.13 -1.0
20,831 - IAI47_18915 0.13 +3.3
20,831 - IAI47_18915 0.13 -0.2
20,831 - IAI47_18915 0.13 +1.1
20,831 - IAI47_18915 0.13 +2.0
20,831 - IAI47_18915 0.13 -1.1
20,850 + IAI47_18915 0.17 +1.6
20,850 + IAI47_18915 0.17 +0.5
20,850 + IAI47_18915 0.17 +1.4
20,850 + IAI47_18915 0.17 -1.7
20,851 - IAI47_18915 0.17 +1.5
20,851 - IAI47_18915 0.17 -1.6
20,851 - IAI47_18915 0.17 +0.6
20,851 - IAI47_18915 0.17 -1.6
20,857 - IAI47_18915 0.18 +2.0
20,887 + IAI47_18915 0.23 -0.3
20,887 + IAI47_18915 0.23 -1.6
20,887 + IAI47_18915 0.23 -1.4
20,887 + IAI47_18915 0.23 -1.0
20,887 + IAI47_18915 0.23 -0.8
20,887 + IAI47_18915 0.23 -3.2
20,887 + IAI47_18915 0.23 +0.9
20,888 - IAI47_18915 0.23 +2.5
20,901 + IAI47_18915 0.26 +2.0
20,901 + IAI47_18915 0.26 -1.3
20,901 + IAI47_18915 0.26 +0.2
20,902 - IAI47_18915 0.26 +0.0
20,902 - IAI47_18915 0.26 +0.9
20,902 - IAI47_18915 0.26 -0.3
20,910 + IAI47_18915 0.27 +0.3
20,910 + IAI47_18915 0.27 -0.7
20,911 - IAI47_18915 0.28 -1.8
20,911 - IAI47_18915 0.28 +1.0
20,913 - IAI47_18915 0.28 -1.6
20,913 - IAI47_18915 0.28 -2.0
20,913 - IAI47_18915 0.28 +0.0
20,924 - IAI47_18915 0.30 +0.4
20,924 - IAI47_18915 0.30 -0.6
20,954 + IAI47_18915 0.35 +1.2
20,954 + IAI47_18915 0.35 -2.1
20,955 - IAI47_18915 0.35 +0.5
21,000 - IAI47_18915 0.44 -0.8
21,000 - IAI47_18915 0.44 -1.4
21,034 - IAI47_18915 0.50 -0.8
21,076 + IAI47_18915 0.57 +0.0
21,102 + IAI47_18915 0.62 +2.0
21,103 - IAI47_18915 0.62 -0.3
21,103 - IAI47_18915 0.62 +2.5
21,103 - IAI47_18915 0.62 -2.2
21,138 + IAI47_18915 0.68 -0.1
21,139 - IAI47_18915 0.69 +1.2
21,139 - IAI47_18915 0.69 +2.9
21,150 - IAI47_18915 0.71 +1.2
21,201 - IAI47_18915 0.80 +2.0
21,253 + IAI47_18915 0.89 -1.3
21,253 + IAI47_18915 0.89 +1.4
21,253 + IAI47_18915 0.89 +0.8
21,253 + IAI47_18915 0.89 -1.1
21,253 + IAI47_18915 0.89 -0.3
21,253 + IAI47_18915 0.89 -0.6
21,253 + IAI47_18915 0.89 -1.0
21,253 + IAI47_18915 0.89 -0.6
21,253 + IAI47_18915 0.89 +0.0
21,253 + IAI47_18915 0.89 +1.2
21,253 + IAI47_18915 0.89 +2.9
21,254 - IAI47_18915 0.89 +2.6
21,254 - IAI47_18915 0.89 +1.0
21,254 - IAI47_18915 0.89 -1.9
21,254 - IAI47_18915 0.89 +2.0
21,254 - IAI47_18915 0.89 -2.0
21,254 - IAI47_18915 0.89 +0.4
21,255 + IAI47_18915 0.90 -2.3
21,256 - IAI47_18915 0.90 -2.3
21,321 + +1.9
21,321 + +0.0
21,321 + +1.2
21,321 + -0.1
21,321 + +1.5
21,321 + -0.2
21,321 + +0.5
21,321 + -1.7
21,321 + +0.6
21,322 - -0.8
21,322 - +0.2
21,322 - -2.0
21,322 - -1.9
21,323 + +0.4
21,323 + -1.7
21,323 + +1.3
21,323 + -1.8
21,324 - +1.1
21,324 - -2.0
21,416 + -4.0
21,417 - +2.0
21,421 + -0.4
21,430 + -0.6
21,431 - +0.5
21,446 + -0.6
21,446 + -1.3
21,446 + +1.0
21,446 + +1.2
21,447 - -1.7
21,447 - +1.4
21,447 - +1.9
21,453 - -0.3
21,496 + -0.3
21,497 - +4.1
21,499 - -2.1
21,536 + +0.3
21,536 + +1.0
21,536 + -1.2
21,536 + -1.3
21,537 - -2.7
21,564 - +1.6
21,579 + +0.2
21,580 - -0.1
21,594 + +2.0
21,594 + -0.3
21,595 - -1.8
21,630 + -0.5
21,667 + -1.4
21,745 + -1.8
21,745 + -0.7
21,746 - +0.5
21,746 - -2.3
21,746 - -0.6
21,746 - -0.3
21,763 + IAI47_18920 0.10 +1.1
21,763 + IAI47_18920 0.10 +1.9
21,763 + IAI47_18920 0.10 -1.6
21,764 - IAI47_18920 0.10 -1.7
21,780 + IAI47_18920 0.13 +0.0
21,903 + IAI47_18920 0.34 +1.3
21,937 + IAI47_18920 0.40 -1.6
21,937 + IAI47_18920 0.40 -0.6
21,938 - IAI47_18920 0.40 -0.6
21,961 + IAI47_18920 0.44 +1.1
21,961 + IAI47_18920 0.44 -2.0
21,962 - IAI47_18920 0.44 -1.3
21,962 - IAI47_18920 0.44 +0.0
21,962 - IAI47_18920 0.44 -0.5
22,000 + IAI47_18920 0.50 -1.6
22,000 + IAI47_18920 0.50 -1.8
22,001 - IAI47_18920 0.51 -0.8
22,079 + IAI47_18920 0.64 -0.6
22,079 + IAI47_18920 0.64 +1.6
22,079 + IAI47_18920 0.64 -0.3
22,080 - IAI47_18920 0.64 +0.4
22,080 - IAI47_18920 0.64 +0.4
22,080 - IAI47_18920 0.64 -1.1
22,080 - IAI47_18920 0.64 +1.8
22,080 - IAI47_18920 0.64 -1.8
22,080 - IAI47_18920 0.64 +0.0
22,174 + IAI47_18920 0.80 +0.6
22,174 + IAI47_18920 0.80 -2.0
22,175 - IAI47_18920 0.80 +0.4
22,175 - IAI47_18920 0.80 -1.1
22,204 + IAI47_18920 0.85 +2.5
22,246 + -0.6
22,247 - +2.0
22,310 + +1.0
22,310 + -1.1

Or see this region's nucleotide sequence