Strain Fitness in Pantoea sp. MT58 around IAI47_11745

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
2,488,966	+		IAI47_11740	0.41	-0.0
2,488,967	-		IAI47_11740	0.41	-1.2
2,488,969	+		IAI47_11740	0.41	+0.2
2,488,970	-		IAI47_11740	0.41	-0.6
2,488,983	-		IAI47_11740	0.43	-2.1
2,489,012	-		IAI47_11740	0.47	-0.5
2,489,054	+		IAI47_11740	0.53	-0.9
2,489,055	-		IAI47_11740	0.54	-1.8
2,489,065	+		IAI47_11740	0.55	+0.2
2,489,104	-		IAI47_11740	0.61	-0.6
2,489,104	-		IAI47_11740	0.61	-1.1
2,489,104	-		IAI47_11740	0.61	-0.8
2,489,105	+		IAI47_11740	0.61	+1.0
2,489,106	-		IAI47_11740	0.61	+4.0
2,489,167	-		IAI47_11740	0.70	+1.3
2,489,206	+		IAI47_11740	0.75	+0.9
2,489,206	+		IAI47_11740	0.75	-1.5
2,489,206	+		IAI47_11740	0.75	+2.1
2,489,206	+		IAI47_11740	0.75	-1.2
2,489,207	-		IAI47_11740	0.75	-0.1
2,489,207	-		IAI47_11740	0.75	+0.8
2,489,207	-		IAI47_11740	0.75	+1.1
2,489,207	-		IAI47_11740	0.75	-0.8
2,489,207	-		IAI47_11740	0.75	-2.1
2,489,208	+		IAI47_11740	0.75	-1.5
2,489,208	+		IAI47_11740	0.75	-0.8
2,489,209	-		IAI47_11740	0.75	-1.1
2,489,209	-		IAI47_11740	0.75	+1.4
2,489,209	-		IAI47_11740	0.75	-1.9
2,489,209	-		IAI47_11740	0.75	-0.1
2,489,209	-		IAI47_11740	0.75	+0.8
2,489,259	-		IAI47_11740	0.83	-1.2
2,489,259	-		IAI47_11740	0.83	-0.1
2,489,294	+		IAI47_11740	0.88	-0.0
2,489,295	-		IAI47_11740	0.88	+2.1
2,489,295	-		IAI47_11740	0.88	-1.5
2,489,295	-		IAI47_11740	0.88	-0.6
2,489,303	-		IAI47_11740	0.89	+0.2
2,489,303	-		IAI47_11740	0.89	+2.0
2,489,320	+				-1.2
2,489,350	+				+0.8
2,489,351	-				-1.7
2,489,361	+				+2.5
2,489,361	+				-0.3
2,489,374	+				+2.0
2,489,374	+				-2.9
2,489,374	+				-1.1
2,489,375	-				+0.0
2,489,375	-				-2.6
2,489,413	+				-2.0
2,489,414	-				-2.6
2,489,414	-				+0.2
2,489,414	-				-2.0
2,489,414	-				-1.6
2,489,414	-				+3.6
2,489,414	-				-0.8
2,489,415	+				+1.5
2,489,416	-				-0.0
2,489,416	-				+0.2
2,489,416	-				+1.0
2,489,431	-				-0.8
2,489,431	-				-0.8
2,489,472	+				+0.8
2,489,473	-				-2.4
2,489,474	+				-1.1
2,489,474	+				+3.0
2,489,476	+				+3.0
2,489,476	+				+3.1
2,489,477	-				-0.6
2,489,477	-				-2.5
2,489,492	+				+0.6
2,489,498	-				-0.6
2,489,498	-				-1.6
2,489,502	+				+1.1
2,489,503	-				-2.2
2,489,504	+				+1.9
2,489,504	+				+0.7
2,489,504	+				-0.5
2,489,504	+				+2.0
2,489,504	+				+1.1
2,489,504	+				+2.6
2,489,504	+				-2.9
2,489,504	+				-0.4
2,489,504	+				-0.9
2,489,548	+				-1.6
2,489,548	+				+1.2
2,489,549	-				+1.8
2,489,549	-				-1.5
2,489,549	-				-1.4
2,489,549	-				+1.6
2,489,549	-				-0.4
2,489,549	-				-1.9
2,489,615	+				+1.2
2,489,616	-				+1.4
2,489,624	+				-1.2
2,489,625	-				+1.4
2,489,636	+				-0.6
2,489,636	+				+2.8
2,489,637	-				+0.4
2,489,642	+				+2.7
2,489,666	+				+1.3
2,489,719	-				+2.2
2,489,726	+				-2.4
2,489,727	-				-0.4
2,489,727	-				-0.8
2,489,727	-				+1.2
2,489,752	+				+1.5
2,489,752	+				+0.5
2,489,752	+				-1.2
2,489,752	+				-1.4
2,489,752	+				+0.2
2,489,752	+				-1.8
2,489,752	+				-0.4
2,489,753	-				-0.4
2,489,753	-				-0.4
2,489,753	-				-1.6
2,489,765	+				-0.1
2,489,765	+				-0.9
2,489,766	-				-2.9
2,489,766	-				+1.2
2,489,766	-				-1.1
2,489,775	+				+2.3
2,489,775	+				-0.6
2,489,775	+				-1.9
2,489,776	-				+3.1
2,489,776	-				+0.3
2,489,776	-				+1.2
2,489,776	-				-0.6
2,489,779	+				+1.8
2,489,779	+				+4.8
2,489,779	+				-1.4
2,489,780	-				+0.5
2,489,780	-				+3.0
2,489,844	+				+0.0
2,489,844	+				+2.2
2,489,844	+				-2.3
2,489,845	-				-0.1
2,489,845	-				+0.2
2,489,850	+				+1.1
2,489,850	+				+3.2
2,489,850	+				+1.8
2,489,850	+				+1.5
2,489,850	+				-0.6
2,489,851	-				+1.0
2,489,851	-				+2.7
2,489,851	-				-1.5
2,489,851	-				-2.2
2,489,852	+				+0.4
2,489,853	-				+0.4
2,489,853	-				-0.8
2,489,887	+				-0.6
2,489,888	-				-1.1
2,489,888	-				-2.5
2,489,892	+				+1.2
2,489,893	-				+1.4
2,489,910	+				+1.4
2,489,910	+				+0.1
2,489,911	-				+1.3
2,489,911	-				-2.2
2,489,940	+				+1.7
2,489,940	+				-2.0
2,489,940	+				-2.0
2,489,940	+				+1.2
2,489,940	+				-0.7
2,489,940	+				+2.1
2,489,940	+				-0.9
2,489,940	+				-1.9
2,489,940	+				+1.6
2,489,941	-				+1.3
2,489,941	-				+2.5
2,489,941	-				-0.2
2,489,941	-				-1.8
2,489,941	-				+0.8
2,489,962	-				+0.4
2,489,984	-				-2.6
2,489,984	-				+1.3
2,489,984	-				+3.5
2,490,173	-		IAI47_11745	0.29	+0.2
2,490,184	+		IAI47_11745	0.30	+3.7
2,490,185	-		IAI47_11745	0.30	+1.1
2,490,185	-		IAI47_11745	0.30	-1.7
2,490,185	-		IAI47_11745	0.30	+1.6
2,490,211	+		IAI47_11745	0.34	+1.6
2,490,211	+		IAI47_11745	0.34	-0.4
2,490,246	+		IAI47_11745	0.39	+3.0
2,490,246	+		IAI47_11745	0.39	-0.4
2,490,246	+		IAI47_11745	0.39	+1.3
2,490,246	+		IAI47_11745	0.39	+0.5
2,490,246	+		IAI47_11745	0.39	-2.9
2,490,247	-		IAI47_11745	0.39	-1.1
2,490,316	+		IAI47_11745	0.48	+0.8
2,490,316	+		IAI47_11745	0.48	+0.9
2,490,317	-		IAI47_11745	0.48	+0.2
2,490,317	-		IAI47_11745	0.48	+3.4
2,490,317	-		IAI47_11745	0.48	-0.9
2,490,317	-		IAI47_11745	0.48	-1.0
2,490,384	+		IAI47_11745	0.57	+2.0
2,490,385	-		IAI47_11745	0.58	-2.5
2,490,413	+		IAI47_11745	0.61	-0.8
2,490,414	-		IAI47_11745	0.62	+1.2
2,490,414	-		IAI47_11745	0.62	+2.6
2,490,470	-		IAI47_11745	0.69	+0.6
2,490,472	+		IAI47_11745	0.69	+1.1
2,490,472	+		IAI47_11745	0.69	-3.2
2,490,473	-		IAI47_11745	0.70	-2.2
2,490,473	-		IAI47_11745	0.70	+4.0
2,490,532	+		IAI47_11745	0.78	-1.2
2,490,533	-		IAI47_11745	0.78	-0.6
2,490,533	-		IAI47_11745	0.78	-1.1
2,490,535	+		IAI47_11745	0.78	+0.2
2,490,535	+		IAI47_11745	0.78	+3.6
2,490,535	+		IAI47_11745	0.78	-0.6
2,490,535	+		IAI47_11745	0.78	-1.9
2,490,536	-		IAI47_11745	0.78	-1.0
2,490,536	-		IAI47_11745	0.78	-0.4
2,490,538	+		IAI47_11745	0.78	+2.7
2,490,538	+		IAI47_11745	0.78	+2.0
2,490,539	-		IAI47_11745	0.78	-1.1
2,490,539	-		IAI47_11745	0.78	-2.2
2,490,539	-		IAI47_11745	0.78	-2.4
2,490,550	-		IAI47_11745	0.80	+2.0
2,490,550	-		IAI47_11745	0.80	+3.0
2,490,630	+				-1.8
2,490,630	+				-1.6
2,490,630	+				-0.2
2,490,630	+				-1.2
2,490,631	-				+2.5
2,490,631	-				+0.6
2,490,631	-				+0.6
2,490,631	-				+1.8
2,490,648	+				+0.6
2,490,649	-				+3.4
2,490,649	-				-0.6
2,490,649	-				-2.0
2,490,677	-				-0.1
2,490,677	-				-1.9
2,490,677	-				+0.9
2,490,677	-				-0.1
2,490,677	-				-0.4
2,490,687	-				+1.3
2,490,693	+				+0.5
2,490,693	+				-0.9
2,490,693	+				-2.9
2,490,694	-				-1.9
2,490,694	-				-1.5
2,490,694	-				+1.2
2,490,694	-				-2.2
2,490,738	+				+2.5
2,490,739	-				-2.6
2,490,739	-				-1.2
2,490,739	-				+0.6
2,490,739	-				+3.2
2,490,742	-				+2.4
2,490,813	+				-1.7
2,490,814	-				+1.3
2,490,814	-				-0.3
2,490,814	-				-0.8
2,490,820	+				+2.0
2,490,821	-				+0.6
2,490,821	-				-0.9
2,490,833	+		IAI47_11750	0.10	-1.2
2,490,834	-		IAI47_11750	0.10	-0.1
2,490,851	-		IAI47_11750	0.12	-1.4
2,490,851	-		IAI47_11750	0.12	-2.5
2,490,885	-		IAI47_11750	0.16	-2.9
2,491,006	+		IAI47_11750	0.29	-1.6
2,491,006	+		IAI47_11750	0.29	-1.9
2,491,038	-		IAI47_11750	0.32	-2.0
2,491,151	+		IAI47_11750	0.44	-0.6
2,491,151	+		IAI47_11750	0.44	+2.4
2,491,151	+		IAI47_11750	0.44	-0.8
2,491,238	+		IAI47_11750	0.53	+1.5
2,491,238	+		IAI47_11750	0.53	-0.2
2,491,239	-		IAI47_11750	0.53	-0.9
2,491,264	+		IAI47_11750	0.56	+1.2
2,491,264	+		IAI47_11750	0.56	+0.8
2,491,281	+		IAI47_11750	0.58	-2.8
2,491,282	-		IAI47_11750	0.58	+1.1
2,491,326	+		IAI47_11750	0.63	-2.1
2,491,360	+		IAI47_11750	0.66	+1.5
2,491,360	+		IAI47_11750	0.66	+0.9
2,491,360	+		IAI47_11750	0.66	-0.8
2,491,361	-		IAI47_11750	0.66	+1.8
2,491,361	-		IAI47_11750	0.66	+3.6
2,491,371	+		IAI47_11750	0.67	-1.4
2,491,463	-		IAI47_11750	0.77	-1.9
2,491,558	-		IAI47_11750	0.87	-0.6
2,491,558	-		IAI47_11750	0.87	-0.4
2,491,622	+				-1.8
2,491,622	+				-1.0
2,491,630	+				-3.2
2,491,662	+				+1.4