Strain Fitness in Pantoea sp. MT58 around IAI47_08210

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,734,751	-		IAI47_08205	0.50	+1.4
1,734,767	+		IAI47_08205	0.51	+0.7
1,734,768	-		IAI47_08205	0.51	+0.2
1,734,768	-		IAI47_08205	0.51	-0.6
1,734,768	-		IAI47_08205	0.51	-1.2
1,734,768	-		IAI47_08205	0.51	-0.6
1,734,768	-		IAI47_08205	0.51	-0.1
1,734,830	+		IAI47_08205	0.55	-1.6
1,734,830	+		IAI47_08205	0.55	-2.0
1,734,892	-		IAI47_08205	0.59	-0.9
1,734,926	+		IAI47_08205	0.62	-0.1
1,734,932	+		IAI47_08205	0.62	+1.3
1,734,933	-		IAI47_08205	0.62	+2.1
1,734,933	-		IAI47_08205	0.62	+0.2
1,734,933	-		IAI47_08205	0.62	-1.0
1,734,933	-		IAI47_08205	0.62	-0.3
1,734,950	+		IAI47_08205	0.63	+3.0
1,734,965	+		IAI47_08205	0.64	+3.2
1,734,966	-		IAI47_08205	0.64	-1.2
1,735,080	+		IAI47_08205	0.72	-0.4
1,735,081	-		IAI47_08205	0.72	-2.0
1,735,130	-		IAI47_08205	0.75	-1.7
1,735,182	-		IAI47_08205	0.79	+2.1
1,735,215	+		IAI47_08205	0.81	+0.3
1,735,215	+		IAI47_08205	0.81	+0.4
1,735,215	+		IAI47_08205	0.81	-1.3
1,735,307	+		IAI47_08205	0.87	-0.1
1,735,308	-		IAI47_08205	0.87	-2.3
1,735,308	-		IAI47_08205	0.87	+1.4
1,735,314	-		IAI47_08205	0.88	+0.9
1,735,347	+				-1.8
1,735,347	+				-0.3
1,735,348	-				-1.3
1,735,348	-				-0.8
1,735,348	-				-0.8
1,735,348	-				+1.2
1,735,365	+				-1.8
1,735,365	+				-1.2
1,735,365	+				+0.7
1,735,365	+				+2.1
1,735,365	+				+2.0
1,735,365	+				+1.0
1,735,365	+				-2.3
1,735,366	-				-0.8
1,735,366	-				+1.8
1,735,491	+				+2.4
1,735,491	+				+0.1
1,735,491	+				-2.3
1,735,492	-				-1.8
1,735,492	-				-0.9
1,735,504	-				+1.7
1,735,544	+				+0.3
1,735,553	-				+1.8
1,735,553	-				-0.5
1,735,561	+				-0.6
1,735,561	+				+1.5
1,735,562	-				-0.8
1,735,574	-				+0.7
1,735,585	+				-1.7
1,735,585	+				+0.2
1,735,585	+				+1.0
1,735,614	-				+1.0
1,735,736	+				+1.2
1,735,737	-				-0.3
1,735,748	+				+1.2
1,735,748	+				-2.3
1,735,756	+				-2.4
1,735,756	+				+1.8
1,735,756	+				-0.1
1,735,756	+				-1.1
1,735,757	-				-0.6
1,735,757	-				-2.1
1,735,757	-				+0.7
1,735,902	+		IAI47_08210	0.26	+3.3
1,735,902	+		IAI47_08210	0.26	+0.4
1,735,902	+		IAI47_08210	0.26	-1.2
1,735,902	+		IAI47_08210	0.26	-0.9
1,735,902	+		IAI47_08210	0.26	-0.8
1,735,903	-		IAI47_08210	0.27	-0.8
1,735,903	-		IAI47_08210	0.27	-0.1
1,735,903	-		IAI47_08210	0.27	-1.1
1,735,903	-		IAI47_08210	0.27	-0.3
1,735,903	-		IAI47_08210	0.27	-0.8
1,735,903	-		IAI47_08210	0.27	+1.2
1,736,052	-		IAI47_08210	0.45	-0.3
1,736,052	-		IAI47_08210	0.45	-1.1
1,736,052	-		IAI47_08210	0.45	+0.8
1,736,052	-		IAI47_08210	0.45	+0.4
1,736,109	+		IAI47_08210	0.52	+0.3
1,736,110	-		IAI47_08210	0.52	-0.1
1,736,188	+		IAI47_08210	0.61	+1.4
1,736,189	-		IAI47_08210	0.61	+0.4
1,736,211	+		IAI47_08210	0.64	+0.7
1,736,212	-		IAI47_08210	0.64	+4.2
1,736,212	-		IAI47_08210	0.64	+0.2
1,736,249	+		IAI47_08210	0.68	-0.5
1,736,249	+		IAI47_08210	0.68	+1.2
1,736,250	-		IAI47_08210	0.69	-1.6
1,736,250	-		IAI47_08210	0.69	-2.5
1,736,343	+		IAI47_08210	0.80	-1.6
1,736,343	+		IAI47_08210	0.80	+1.0
1,736,344	-		IAI47_08210	0.80	-0.6
1,736,344	-		IAI47_08210	0.80	+0.9
1,736,344	-		IAI47_08210	0.80	+1.6
1,736,344	-		IAI47_08210	0.80	-0.8
1,736,344	-		IAI47_08210	0.80	-1.9
1,736,346	+		IAI47_08210	0.80	-1.0
1,736,346	+		IAI47_08210	0.80	+1.7
1,736,346	+		IAI47_08210	0.80	+0.2
1,736,347	-		IAI47_08210	0.80	+0.5
1,736,351	+		IAI47_08210	0.81	+3.4
1,736,352	-		IAI47_08210	0.81	+1.3
1,736,398	+		IAI47_08210	0.87	-0.3
1,736,435	-				-0.9
1,736,435	-				+1.7
1,736,472	+				+2.4
1,736,472	+				-2.7
1,736,506	+				-1.2
1,736,506	+				-2.0
1,736,507	-				+2.1
1,736,507	-				-1.7
1,736,507	-				-1.6
1,736,507	-				+0.7
1,736,518	+				+1.2
1,736,519	-				-0.1
1,736,519	-				-0.1
1,736,547	+				+1.7
1,736,547	+				+0.8
1,736,548	-				+2.7
1,736,548	-				+0.2
1,736,548	-				+1.1
1,736,557	+				-0.3
1,736,557	+				-1.8
1,736,689	-		IAI47_08215	0.11	+1.5
1,736,846	+		IAI47_08215	0.25	-2.5
1,736,847	-		IAI47_08215	0.25	-1.5
1,736,938	+		IAI47_08215	0.34	+0.1
1,736,938	+		IAI47_08215	0.34	+0.7
1,736,938	+		IAI47_08215	0.34	+2.9
1,736,938	+		IAI47_08215	0.34	-2.6
1,736,938	+		IAI47_08215	0.34	-1.3
1,736,938	+		IAI47_08215	0.34	+0.2
1,736,939	-		IAI47_08215	0.34	-1.6
1,736,946	+		IAI47_08215	0.34	-1.3
1,736,946	+		IAI47_08215	0.34	-1.3
1,736,947	-		IAI47_08215	0.34	+0.2
1,736,947	-		IAI47_08215	0.34	-1.8
1,736,947	-		IAI47_08215	0.34	-0.8
1,736,947	-		IAI47_08215	0.34	+0.2
1,736,966	+		IAI47_08215	0.36	-2.5
1,736,967	-		IAI47_08215	0.36	-0.9
1,736,967	-		IAI47_08215	0.36	-1.5
1,736,969	-		IAI47_08215	0.36	-0.6
1,736,969	-		IAI47_08215	0.36	+1.8
1,736,969	-		IAI47_08215	0.36	-2.1
1,736,969	-		IAI47_08215	0.36	+0.5
1,736,975	+		IAI47_08215	0.37	+0.8
1,736,975	+		IAI47_08215	0.37	+0.0
1,736,975	+		IAI47_08215	0.37	-3.0
1,736,975	+		IAI47_08215	0.37	+0.2
1,736,975	+		IAI47_08215	0.37	-0.6
1,736,975	+		IAI47_08215	0.37	-0.1
1,736,975	+		IAI47_08215	0.37	-2.7
1,736,976	-		IAI47_08215	0.37	-0.3
1,736,976	-		IAI47_08215	0.37	-1.8
1,736,976	-		IAI47_08215	0.37	+0.1
1,736,976	-		IAI47_08215	0.37	-0.9
1,737,008	-		IAI47_08215	0.40	-1.2
1,737,023	-		IAI47_08215	0.41	+2.7
1,737,023	-		IAI47_08215	0.41	-0.6
1,737,086	+		IAI47_08215	0.47	+1.2
1,737,089	+		IAI47_08215	0.47	+2.6
1,737,089	+		IAI47_08215	0.47	+2.7
1,737,089	+		IAI47_08215	0.47	-1.1
1,737,089	+		IAI47_08215	0.47	-3.1
1,737,089	+		IAI47_08215	0.47	+1.6
1,737,090	-		IAI47_08215	0.47	+2.4
1,737,090	-		IAI47_08215	0.47	+1.0
1,737,090	-		IAI47_08215	0.47	-1.0
1,737,090	-		IAI47_08215	0.47	-0.1
1,737,161	+		IAI47_08215	0.53	-2.5
1,737,161	+		IAI47_08215	0.53	+1.7
1,737,161	+		IAI47_08215	0.53	-2.3
1,737,161	+		IAI47_08215	0.53	-1.9
1,737,185	-		IAI47_08215	0.56	-0.3
1,737,185	-		IAI47_08215	0.56	+0.4
1,737,254	+		IAI47_08215	0.62	+0.3
1,737,255	-		IAI47_08215	0.62	-0.1
1,737,255	-		IAI47_08215	0.62	-1.3
1,737,255	-		IAI47_08215	0.62	-2.7
1,737,262	+		IAI47_08215	0.63	-1.2
1,737,262	+		IAI47_08215	0.63	-0.8
1,737,271	+		IAI47_08215	0.63	+0.7
1,737,325	+		IAI47_08215	0.68	+2.1
1,737,326	-		IAI47_08215	0.68	-0.8
1,737,326	-		IAI47_08215	0.68	-1.2
1,737,398	+		IAI47_08215	0.75	-0.9
1,737,398	+		IAI47_08215	0.75	+1.9
1,737,398	+		IAI47_08215	0.75	+0.2
1,737,398	+		IAI47_08215	0.75	+3.2
1,737,399	-		IAI47_08215	0.75	-1.5
1,737,465	+		IAI47_08215	0.81	+1.2
1,737,505	+		IAI47_08215	0.84	-0.6
1,737,505	+		IAI47_08215	0.84	+0.3
1,737,505	+		IAI47_08215	0.84	-0.2
1,737,506	-		IAI47_08215	0.84	-1.8
1,737,506	-		IAI47_08215	0.84	+0.7
1,737,506	-		IAI47_08215	0.84	+1.7
1,737,506	-		IAI47_08215	0.84	+2.5