Strain Fitness in Pantoea sp. MT58 around IAI47_07380

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_07370 and IAI47_07375 are separated by 27 nucleotidesIAI47_07375 and IAI47_07380 are separated by 4 nucleotidesIAI47_07380 and IAI47_07385 overlap by 4 nucleotidesIAI47_07385 and IAI47_07390 are separated by 13 nucleotides IAI47_07370: IAI47_07370 - FAD-binding oxidoreductase, at 1,557,219 to 1,558,622 _07370 IAI47_07375: IAI47_07375 - ABC transporter permease, at 1,558,650 to 1,559,465 _07375 IAI47_07380: IAI47_07380 - ABC transporter ATP-binding protein, at 1,559,470 to 1,560,297 _07380 IAI47_07385: IAI47_07385 - ABC transporter substrate-binding protein, at 1,560,294 to 1,561,277 _07385 IAI47_07390: IAI47_07390 - creatininase family protein, at 1,561,291 to 1,562,172 _07390 Position (kb) 1559 1560 1561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1558.494 kb on - strandat 1558.584 kb on + strandat 1558.585 kb on - strandat 1558.585 kb on - strandat 1558.622 kb on + strandat 1558.623 kb on - strandat 1558.623 kb on - strandat 1558.636 kb on - strandat 1558.652 kb on - strandat 1558.748 kb on + strand, within IAI47_07375at 1558.748 kb on + strand, within IAI47_07375at 1558.749 kb on - strand, within IAI47_07375at 1558.790 kb on - strand, within IAI47_07375at 1558.824 kb on - strand, within IAI47_07375at 1558.824 kb on - strand, within IAI47_07375at 1558.827 kb on - strand, within IAI47_07375at 1558.912 kb on + strand, within IAI47_07375at 1558.913 kb on - strand, within IAI47_07375at 1558.913 kb on - strand, within IAI47_07375at 1558.981 kb on + strand, within IAI47_07375at 1559.002 kb on - strand, within IAI47_07375at 1559.025 kb on - strand, within IAI47_07375at 1559.152 kb on + strand, within IAI47_07375at 1559.153 kb on - strand, within IAI47_07375at 1559.153 kb on - strand, within IAI47_07375at 1559.153 kb on - strand, within IAI47_07375at 1559.153 kb on - strand, within IAI47_07375at 1559.153 kb on - strand, within IAI47_07375at 1559.175 kb on - strand, within IAI47_07375at 1559.187 kb on + strand, within IAI47_07375at 1559.188 kb on - strand, within IAI47_07375at 1559.188 kb on - strand, within IAI47_07375at 1559.188 kb on - strand, within IAI47_07375at 1559.188 kb on - strand, within IAI47_07375at 1559.354 kb on - strand, within IAI47_07375at 1559.354 kb on - strand, within IAI47_07375at 1559.354 kb on - strand, within IAI47_07375at 1559.373 kb on + strand, within IAI47_07375at 1559.398 kb on - strandat 1559.589 kb on + strand, within IAI47_07380at 1559.589 kb on + strand, within IAI47_07380at 1559.815 kb on + strand, within IAI47_07380at 1559.816 kb on - strand, within IAI47_07380at 1559.816 kb on - strand, within IAI47_07380at 1559.816 kb on - strand, within IAI47_07380at 1559.908 kb on - strand, within IAI47_07380at 1559.970 kb on + strand, within IAI47_07380at 1559.971 kb on - strand, within IAI47_07380at 1560.097 kb on + strand, within IAI47_07380at 1560.105 kb on + strand, within IAI47_07380at 1560.105 kb on + strand, within IAI47_07380at 1560.106 kb on - strand, within IAI47_07380at 1560.106 kb on - strand, within IAI47_07380at 1560.106 kb on - strand, within IAI47_07380at 1560.156 kb on + strand, within IAI47_07380at 1560.156 kb on + strand, within IAI47_07380at 1560.157 kb on - strand, within IAI47_07380at 1560.250 kb on - strandat 1560.250 kb on - strandat 1560.250 kb on - strandat 1560.250 kb on - strandat 1560.302 kb on + strandat 1560.302 kb on + strandat 1560.303 kb on - strandat 1560.303 kb on - strandat 1560.303 kb on - strandat 1560.317 kb on + strandat 1560.317 kb on + strandat 1560.318 kb on - strandat 1560.332 kb on + strandat 1560.333 kb on - strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.334 kb on + strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.335 kb on - strandat 1560.375 kb on - strandat 1560.469 kb on + strand, within IAI47_07385at 1560.469 kb on + strand, within IAI47_07385at 1560.470 kb on - strand, within IAI47_07385at 1560.470 kb on - strand, within IAI47_07385at 1560.470 kb on - strand, within IAI47_07385at 1560.524 kb on + strand, within IAI47_07385at 1560.568 kb on + strand, within IAI47_07385at 1560.569 kb on - strand, within IAI47_07385at 1560.569 kb on - strand, within IAI47_07385at 1560.650 kb on + strand, within IAI47_07385at 1560.650 kb on + strand, within IAI47_07385at 1560.650 kb on + strand, within IAI47_07385at 1560.664 kb on + strand, within IAI47_07385at 1560.687 kb on - strand, within IAI47_07385at 1560.694 kb on + strand, within IAI47_07385at 1560.694 kb on + strand, within IAI47_07385at 1560.694 kb on + strand, within IAI47_07385at 1560.694 kb on + strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.695 kb on - strand, within IAI47_07385at 1560.700 kb on + strand, within IAI47_07385at 1560.700 kb on + strand, within IAI47_07385at 1560.700 kb on + strand, within IAI47_07385at 1560.700 kb on + strandat 1560.700 kb on + strand, within IAI47_07385at 1560.700 kb on + strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.701 kb on - strand, within IAI47_07385at 1560.748 kb on + strand, within IAI47_07385at 1560.749 kb on - strand, within IAI47_07385at 1560.760 kb on - strand, within IAI47_07385at 1560.760 kb on - strand, within IAI47_07385at 1560.760 kb on - strand, within IAI47_07385at 1560.767 kb on + strand, within IAI47_07385at 1560.768 kb on - strand, within IAI47_07385at 1560.768 kb on - strand, within IAI47_07385at 1560.821 kb on + strand, within IAI47_07385at 1560.863 kb on + strand, within IAI47_07385at 1560.863 kb on + strand, within IAI47_07385at 1560.863 kb on + strand, within IAI47_07385at 1560.863 kb on + strand, within IAI47_07385at 1560.863 kb on + strand, within IAI47_07385at 1560.863 kb on + strand, within IAI47_07385at 1560.864 kb on - strand, within IAI47_07385at 1560.864 kb on - strand, within IAI47_07385at 1560.864 kb on - strand, within IAI47_07385at 1560.864 kb on - strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.865 kb on + strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.866 kb on - strand, within IAI47_07385at 1560.923 kb on + strand, within IAI47_07385at 1560.935 kb on + strand, within IAI47_07385at 1560.935 kb on + strand, within IAI47_07385at 1560.935 kb on + strand, within IAI47_07385at 1560.936 kb on - strand, within IAI47_07385at 1560.936 kb on - strand, within IAI47_07385at 1561.031 kb on + strand, within IAI47_07385at 1561.032 kb on - strand, within IAI47_07385at 1561.032 kb on - strand, within IAI47_07385at 1561.071 kb on - strand, within IAI47_07385at 1561.071 kb on - strand, within IAI47_07385at 1561.071 kb on - strand, within IAI47_07385at 1561.091 kb on + strand, within IAI47_07385at 1561.120 kb on + strand, within IAI47_07385at 1561.120 kb on + strand, within IAI47_07385at 1561.120 kb on + strand, within IAI47_07385at 1561.120 kb on + strand, within IAI47_07385at 1561.121 kb on - strand, within IAI47_07385at 1561.130 kb on + strand, within IAI47_07385at 1561.252 kb on + strandat 1561.252 kb on + strandat 1561.252 kb on + strandat 1561.252 kb on + strandat 1561.252 kb on + strandat 1561.252 kb on + strandat 1561.253 kb on - strandat 1561.253 kb on - strandat 1561.253 kb on - strandat 1561.253 kb on - strandat 1561.253 kb on - strandat 1561.270 kb on - strandat 1561.270 kb on - strandat 1561.292 kb on + strandat 1561.292 kb on + strandat 1561.292 kb on + strandat 1561.292 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
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1,558,494 - +1.2
1,558,584 + -1.9
1,558,585 - +0.7
1,558,585 - -1.7
1,558,622 + -2.6
1,558,623 - -1.6
1,558,623 - -1.9
1,558,636 - +1.5
1,558,652 - -2.4
1,558,748 + IAI47_07375 0.12 +0.8
1,558,748 + IAI47_07375 0.12 -2.8
1,558,749 - IAI47_07375 0.12 -0.1
1,558,790 - IAI47_07375 0.17 +0.6
1,558,824 - IAI47_07375 0.21 -0.8
1,558,824 - IAI47_07375 0.21 -3.3
1,558,827 - IAI47_07375 0.22 -1.9
1,558,912 + IAI47_07375 0.32 +0.8
1,558,913 - IAI47_07375 0.32 -0.9
1,558,913 - IAI47_07375 0.32 +1.2
1,558,981 + IAI47_07375 0.41 -1.6
1,559,002 - IAI47_07375 0.43 -0.2
1,559,025 - IAI47_07375 0.46 -1.7
1,559,152 + IAI47_07375 0.62 -1.8
1,559,153 - IAI47_07375 0.62 -0.9
1,559,153 - IAI47_07375 0.62 +3.0
1,559,153 - IAI47_07375 0.62 -1.5
1,559,153 - IAI47_07375 0.62 -2.0
1,559,153 - IAI47_07375 0.62 +0.4
1,559,175 - IAI47_07375 0.64 -0.4
1,559,187 + IAI47_07375 0.66 -0.8
1,559,188 - IAI47_07375 0.66 +2.6
1,559,188 - IAI47_07375 0.66 -1.2
1,559,188 - IAI47_07375 0.66 -2.4
1,559,188 - IAI47_07375 0.66 -1.7
1,559,354 - IAI47_07375 0.86 +1.2
1,559,354 - IAI47_07375 0.86 -1.7
1,559,354 - IAI47_07375 0.86 +0.6
1,559,373 + IAI47_07375 0.89 -1.3
1,559,398 - +2.5
1,559,589 + IAI47_07380 0.14 -0.4
1,559,589 + IAI47_07380 0.14 -0.4
1,559,815 + IAI47_07380 0.42 -0.9
1,559,816 - IAI47_07380 0.42 -0.6
1,559,816 - IAI47_07380 0.42 +0.6
1,559,816 - IAI47_07380 0.42 +2.3
1,559,908 - IAI47_07380 0.53 +3.5
1,559,970 + IAI47_07380 0.60 +0.8
1,559,971 - IAI47_07380 0.61 +1.4
1,560,097 + IAI47_07380 0.76 -2.7
1,560,105 + IAI47_07380 0.77 -2.6
1,560,105 + IAI47_07380 0.77 +1.0
1,560,106 - IAI47_07380 0.77 +2.4
1,560,106 - IAI47_07380 0.77 -1.9
1,560,106 - IAI47_07380 0.77 +1.3
1,560,156 + IAI47_07380 0.83 -1.9
1,560,156 + IAI47_07380 0.83 -1.4
1,560,157 - IAI47_07380 0.83 -0.7
1,560,250 - -1.9
1,560,250 - -2.5
1,560,250 - -2.4
1,560,250 - -0.1
1,560,302 + -0.8
1,560,302 + +1.2
1,560,303 - +1.7
1,560,303 - +0.0
1,560,303 - -0.4
1,560,317 + +0.2
1,560,317 + +1.2
1,560,318 - -3.1
1,560,332 + +1.2
1,560,333 - -1.2
1,560,334 + -1.9
1,560,334 + -2.6
1,560,334 + -0.4
1,560,334 + -2.9
1,560,334 + +3.4
1,560,334 + -1.8
1,560,334 + -2.6
1,560,334 + -0.9
1,560,334 + +3.0
1,560,334 + -1.9
1,560,334 + +3.8
1,560,334 + +1.9
1,560,334 + +0.5
1,560,334 + -2.1
1,560,334 + -1.1
1,560,335 - +0.2
1,560,335 - -0.4
1,560,335 - -0.4
1,560,335 - -2.2
1,560,335 - +0.2
1,560,335 - -0.9
1,560,335 - -1.4
1,560,335 - +1.4
1,560,335 - +1.0
1,560,335 - +1.7
1,560,335 - -0.8
1,560,375 - -0.1
1,560,469 + IAI47_07385 0.18 +0.4
1,560,469 + IAI47_07385 0.18 +1.0
1,560,470 - IAI47_07385 0.18 -0.8
1,560,470 - IAI47_07385 0.18 -0.6
1,560,470 - IAI47_07385 0.18 -0.9
1,560,524 + IAI47_07385 0.23 +0.3
1,560,568 + IAI47_07385 0.28 -0.1
1,560,569 - IAI47_07385 0.28 -0.9
1,560,569 - IAI47_07385 0.28 -0.5
1,560,650 + IAI47_07385 0.36 +2.0
1,560,650 + IAI47_07385 0.36 -0.9
1,560,650 + IAI47_07385 0.36 +0.6
1,560,664 + IAI47_07385 0.38 +1.7
1,560,687 - IAI47_07385 0.40 +2.2
1,560,694 + IAI47_07385 0.41 +0.1
1,560,694 + IAI47_07385 0.41 -0.4
1,560,694 + IAI47_07385 0.41 -0.3
1,560,694 + IAI47_07385 0.41 +2.5
1,560,695 - IAI47_07385 0.41 +1.1
1,560,695 - IAI47_07385 0.41 -0.0
1,560,695 - IAI47_07385 0.41 -1.1
1,560,695 - IAI47_07385 0.41 -0.8
1,560,695 - IAI47_07385 0.41 +0.9
1,560,695 - IAI47_07385 0.41 +2.1
1,560,695 - IAI47_07385 0.41 +0.3
1,560,695 - IAI47_07385 0.41 -1.2
1,560,695 - IAI47_07385 0.41 -0.4
1,560,695 - IAI47_07385 0.41 -0.1
1,560,695 - IAI47_07385 0.41 -0.4
1,560,695 - IAI47_07385 0.41 -1.8
1,560,700 + IAI47_07385 0.41 +2.8
1,560,700 + IAI47_07385 0.41 -1.2
1,560,700 + IAI47_07385 0.41 +0.6
1,560,700 + +2.2
1,560,700 + IAI47_07385 0.41 -0.6
1,560,700 + IAI47_07385 0.41 +0.2
1,560,701 - IAI47_07385 0.41 +0.6
1,560,701 - IAI47_07385 0.41 -1.1
1,560,701 - IAI47_07385 0.41 -0.5
1,560,701 - IAI47_07385 0.41 -0.4
1,560,701 - IAI47_07385 0.41 -1.6
1,560,701 - IAI47_07385 0.41 +1.9
1,560,701 - IAI47_07385 0.41 -1.8
1,560,701 - IAI47_07385 0.41 -0.0
1,560,701 - IAI47_07385 0.41 +0.1
1,560,701 - IAI47_07385 0.41 -0.9
1,560,701 - IAI47_07385 0.41 -1.8
1,560,701 - IAI47_07385 0.41 +0.1
1,560,701 - IAI47_07385 0.41 +2.4
1,560,748 + IAI47_07385 0.46 -0.1
1,560,749 - IAI47_07385 0.46 -1.9
1,560,760 - IAI47_07385 0.47 +0.9
1,560,760 - IAI47_07385 0.47 +3.7
1,560,760 - IAI47_07385 0.47 -0.7
1,560,767 + IAI47_07385 0.48 -0.0
1,560,768 - IAI47_07385 0.48 +2.6
1,560,768 - IAI47_07385 0.48 +1.0
1,560,821 + IAI47_07385 0.54 +0.6
1,560,863 + IAI47_07385 0.58 -1.4
1,560,863 + IAI47_07385 0.58 -0.4
1,560,863 + IAI47_07385 0.58 +2.2
1,560,863 + IAI47_07385 0.58 -1.8
1,560,863 + IAI47_07385 0.58 -1.6
1,560,863 + IAI47_07385 0.58 -0.6
1,560,864 - IAI47_07385 0.58 -2.0
1,560,864 - IAI47_07385 0.58 -2.4
1,560,864 - IAI47_07385 0.58 +0.2
1,560,864 - IAI47_07385 0.58 +0.6
1,560,865 + IAI47_07385 0.58 +0.1
1,560,865 + IAI47_07385 0.58 +0.1
1,560,865 + IAI47_07385 0.58 +1.0
1,560,865 + IAI47_07385 0.58 -0.4
1,560,865 + IAI47_07385 0.58 -0.9
1,560,865 + IAI47_07385 0.58 +1.4
1,560,865 + IAI47_07385 0.58 -1.4
1,560,865 + IAI47_07385 0.58 -1.6
1,560,866 - IAI47_07385 0.58 +0.2
1,560,866 - IAI47_07385 0.58 +2.1
1,560,866 - IAI47_07385 0.58 +2.4
1,560,866 - IAI47_07385 0.58 -2.1
1,560,866 - IAI47_07385 0.58 -1.9
1,560,866 - IAI47_07385 0.58 +1.8
1,560,866 - IAI47_07385 0.58 -1.1
1,560,866 - IAI47_07385 0.58 -1.0
1,560,923 + IAI47_07385 0.64 +0.8
1,560,935 + IAI47_07385 0.65 +0.6
1,560,935 + IAI47_07385 0.65 +0.8
1,560,935 + IAI47_07385 0.65 -2.4
1,560,936 - IAI47_07385 0.65 -1.1
1,560,936 - IAI47_07385 0.65 +0.2
1,561,031 + IAI47_07385 0.75 -0.8
1,561,032 - IAI47_07385 0.75 +1.8
1,561,032 - IAI47_07385 0.75 -0.8
1,561,071 - IAI47_07385 0.79 -0.1
1,561,071 - IAI47_07385 0.79 +0.8
1,561,071 - IAI47_07385 0.79 +1.8
1,561,091 + IAI47_07385 0.81 +1.4
1,561,120 + IAI47_07385 0.84 +1.1
1,561,120 + IAI47_07385 0.84 -1.7
1,561,120 + IAI47_07385 0.84 +0.1
1,561,120 + IAI47_07385 0.84 -0.4
1,561,121 - IAI47_07385 0.84 +0.6
1,561,130 + IAI47_07385 0.85 +4.4
1,561,252 + +3.0
1,561,252 + -2.4
1,561,252 + -0.2
1,561,252 + -0.3
1,561,252 + +2.0
1,561,252 + +2.8
1,561,253 - +2.5
1,561,253 - -0.4
1,561,253 - -1.8
1,561,253 - -1.5
1,561,253 - -2.0
1,561,270 - -0.1
1,561,270 - -0.1
1,561,292 + +2.1
1,561,292 + +2.2
1,561,292 + +0.8
1,561,292 + +0.6

Or see this region's nucleotide sequence