Strain Fitness in Pantoea sp. MT58 around IAI47_07215

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,525,325	+		IAI47_07210	0.76	+1.8
1,525,326	-		IAI47_07210	0.76	-1.3
1,525,403	+		IAI47_07210	0.78	+1.5
1,525,403	+		IAI47_07210	0.78	-0.1
1,525,404	-		IAI47_07210	0.78	-1.8
1,525,407	-		IAI47_07210	0.78	-1.8
1,525,407	-		IAI47_07210	0.78	+2.3
1,525,467	-		IAI47_07210	0.80	+1.5
1,525,467	-		IAI47_07210	0.80	-0.9
1,525,531	+		IAI47_07210	0.82	-3.4
1,525,601	-		IAI47_07210	0.85	-1.8
1,525,645	+		IAI47_07210	0.86	-3.2
1,525,645	+		IAI47_07210	0.86	-0.6
1,525,645	+		IAI47_07210	0.86	+2.5
1,525,646	-		IAI47_07210	0.86	+2.6
1,525,646	-		IAI47_07210	0.86	+1.5
1,525,672	+		IAI47_07210	0.87	-1.9
1,525,672	+		IAI47_07210	0.87	+1.8
1,525,672	+		IAI47_07210	0.87	+0.9
1,525,672	+		IAI47_07210	0.87	-0.4
1,525,672	+		IAI47_07210	0.87	+1.2
1,525,673	-		IAI47_07210	0.87	+1.4
1,525,673	-		IAI47_07210	0.87	-0.1
1,525,673	-		IAI47_07210	0.87	+1.7
1,525,673	-		IAI47_07210	0.87	+2.9
1,525,673	-		IAI47_07210	0.87	-1.6
1,525,716	-		IAI47_07210	0.88	-0.6
1,525,763	+				-2.7
1,525,763	+				-0.2
1,525,764	-				-1.2
1,525,764	-				-1.3
1,525,834	+				-2.0
1,525,846	+				+0.9
1,525,847	-				-0.3
1,525,847	-				+1.4
1,525,868	-				+3.3
1,525,899	-				-2.2
1,525,899	-				+1.0
1,525,899	-				+6.3
1,525,939	-				+1.8
1,525,972	+				-0.9
1,525,972	+				-0.1
1,525,973	-				-3.0
1,526,001	+				-1.1
1,526,001	+				-0.6
1,526,001	+				-1.7
1,526,001	+				-0.1
1,526,002	-				+0.7
1,526,002	-				-0.3
1,526,018	+				-3.6
1,526,018	+				+0.7
1,526,018	+				-1.1
1,526,036	+				-1.8
1,526,037	-				-3.2
1,526,070	+				+0.7
1,526,070	+				-1.2
1,526,071	-				+0.7
1,526,071	-				-1.1
1,526,108	+				-0.1
1,526,161	+				-2.2
1,526,162	-				-0.1
1,526,185	+				-0.9
1,526,185	+				+1.9
1,526,187	+				+0.7
1,526,187	+				-2.3
1,526,187	+				-2.9
1,526,187	+				-0.8
1,526,187	+				-1.2
1,526,187	+				-0.3
1,526,187	+				-1.1
1,526,188	-				-0.0
1,526,188	-				-1.9
1,526,188	-				+3.2
1,526,188	-				+0.7
1,526,188	-				-1.6
1,526,222	+				+2.8
1,526,223	-				+3.8
1,526,223	-				+2.6
1,526,223	-				-1.1
1,526,224	+				+0.2
1,526,224	+				+0.7
1,526,224	+				+2.1
1,526,224	+				-0.9
1,526,224	+				-0.6
1,526,224	+				-0.3
1,526,224	+				+1.6
1,526,224	+				-2.6
1,526,224	+				+1.1
1,526,225	-				+1.7
1,526,225	-				-1.5
1,526,225	-				-0.3
1,526,225	-				-1.9
1,526,225	-				+2.0
1,526,225	-				-1.1
1,526,225	-				+0.2
1,526,230	-				+0.2
1,526,302	+				-0.5
1,526,302	+				+1.8
1,526,302	+				-3.3
1,526,303	-				+0.7
1,526,303	-				-1.5
1,526,398	+				+1.2
1,526,398	+				+3.5
1,526,399	-				-1.7
1,526,399	-				+0.1
1,526,508	+				+1.1
1,526,509	-				-0.8
1,526,509	-				-1.7
1,526,513	+				+1.9
1,526,514	-				-0.6
1,526,588	+		IAI47_07215	0.13	+0.8
1,526,588	+		IAI47_07215	0.13	+2.0
1,526,588	+		IAI47_07215	0.13	+0.2
1,526,588	+		IAI47_07215	0.13	-1.8
1,526,588	+		IAI47_07215	0.13	-0.5
1,526,588	+		IAI47_07215	0.13	+0.5
1,526,588	+		IAI47_07215	0.13	+1.8
1,526,588	+		IAI47_07215	0.13	+3.2
1,526,588	+		IAI47_07215	0.13	+1.1
1,526,588	+		IAI47_07215	0.13	+2.1
1,526,589	-		IAI47_07215	0.13	-0.3
1,526,589	-		IAI47_07215	0.13	-1.9
1,526,589	-		IAI47_07215	0.13	-2.2
1,526,589	-		IAI47_07215	0.13	+0.2
1,526,589	-		IAI47_07215	0.13	+0.4
1,526,589	-		IAI47_07215	0.13	+2.7
1,526,589	-		IAI47_07215	0.13	-0.9
1,526,589	-		IAI47_07215	0.13	-2.0
1,526,589	-		IAI47_07215	0.13	-1.1
1,526,590	+		IAI47_07215	0.13	+3.0
1,526,591	-		IAI47_07215	0.13	-1.2
1,526,602	+		IAI47_07215	0.14	-1.9
1,526,603	-		IAI47_07215	0.14	+1.7
1,526,634	-		IAI47_07215	0.15	-0.1
1,526,707	+		IAI47_07215	0.19	-2.6
1,526,707	+		IAI47_07215	0.19	+2.2
1,526,708	-		IAI47_07215	0.19	+2.2
1,526,723	-		IAI47_07215	0.19	-3.1
1,526,736	+		IAI47_07215	0.20	-1.5
1,526,736	+		IAI47_07215	0.20	+1.5
1,526,759	+		IAI47_07215	0.21	-0.1
1,526,759	+		IAI47_07215	0.21	-2.0
1,526,760	-		IAI47_07215	0.21	-0.3
1,526,760	-		IAI47_07215	0.21	-0.6
1,526,760	-		IAI47_07215	0.21	+0.9
1,526,789	+		IAI47_07215	0.22	+2.0
1,526,789	+		IAI47_07215	0.22	+5.0
1,526,790	-		IAI47_07215	0.22	+3.1
1,526,790	-		IAI47_07215	0.22	-2.4
1,526,790	-		IAI47_07215	0.22	-1.9
1,526,790	-		IAI47_07215	0.22	+0.2
1,526,790	-		IAI47_07215	0.22	-1.7
1,526,790	-		IAI47_07215	0.22	+1.0
1,526,790	-		IAI47_07215	0.22	+0.1
1,526,790	-		IAI47_07215	0.22	-3.1
1,526,790	-		IAI47_07215	0.22	-0.0
1,526,791	+		IAI47_07215	0.22	+1.0
1,526,791	+		IAI47_07215	0.22	-1.5
1,526,791	+		IAI47_07215	0.22	+0.1
1,526,792	-		IAI47_07215	0.22	-2.0
1,526,792	-		IAI47_07215	0.22	+1.6
1,526,792	-		IAI47_07215	0.22	+1.2
1,526,978	+		IAI47_07215	0.31	-0.6
1,526,978	+		IAI47_07215	0.31	-0.8
1,526,978	+		IAI47_07215	0.31	-0.2
1,526,979	-		IAI47_07215	0.31	+2.5
1,526,979	-		IAI47_07215	0.31	+0.1
1,527,103	+		IAI47_07215	0.37	-2.7
1,527,103	+		IAI47_07215	0.37	+2.2
1,527,103	+		IAI47_07215	0.37	-0.5
1,527,104	-		IAI47_07215	0.37	+0.7
1,527,104	-		IAI47_07215	0.37	-1.5
1,527,104	-		IAI47_07215	0.37	-2.2
1,527,104	-		IAI47_07215	0.37	+1.2
1,527,104	-		IAI47_07215	0.37	-1.9
1,527,104	-		IAI47_07215	0.37	-2.6
1,527,104	-		IAI47_07215	0.37	-0.9
1,527,104	-		IAI47_07215	0.37	-1.7
1,527,104	-		IAI47_07215	0.37	+4.6
1,527,104	-		IAI47_07215	0.37	-0.3
1,527,104	-		IAI47_07215	0.37	+0.7
1,527,112	+		IAI47_07215	0.37	-2.2
1,527,112	+		IAI47_07215	0.37	+0.1
1,527,113	-		IAI47_07215	0.37	+0.7
1,527,232	+		IAI47_07215	0.43	-0.9
1,527,232	+		IAI47_07215	0.43	+1.2
1,527,284	+		IAI47_07215	0.45	-0.9
1,527,284	+		IAI47_07215	0.45	+1.7
1,527,285	-		IAI47_07215	0.45	-0.6
1,527,285	-		IAI47_07215	0.45	-0.3
1,527,285	-		IAI47_07215	0.45	+0.3
1,527,308	+		IAI47_07215	0.46	+2.8
1,527,308	+		IAI47_07215	0.46	-2.3
1,527,309	-		IAI47_07215	0.46	+0.8
1,527,309	-		IAI47_07215	0.46	-2.0
1,527,309	-		IAI47_07215	0.46	+2.1
1,527,309	-		IAI47_07215	0.46	+2.2
1,527,309	-				+1.2
1,527,530	-		IAI47_07215	0.56	+1.9
1,527,547	+		IAI47_07215	0.57	+1.7
1,527,566	+		IAI47_07215	0.58	+0.4
1,527,566	+		IAI47_07215	0.58	-1.7
1,527,566	+		IAI47_07215	0.58	+1.4
1,527,566	+		IAI47_07215	0.58	-1.1
1,527,566	+		IAI47_07215	0.58	-1.2
1,527,566	+		IAI47_07215	0.58	+0.0
1,527,567	-		IAI47_07215	0.58	+1.2
1,527,567	-		IAI47_07215	0.58	+0.8
1,527,629	+		IAI47_07215	0.61	-1.9
1,527,629	+		IAI47_07215	0.61	-2.5
1,527,630	-		IAI47_07215	0.61	-1.1
1,527,649	+		IAI47_07215	0.62	-0.9
1,528,046	+		IAI47_07215	0.80	+1.1
1,528,063	+		IAI47_07215	0.81	+1.0
1,528,165	+		IAI47_07215	0.85	-1.3
1,528,189	+		IAI47_07215	0.87	-0.3
1,528,190	-		IAI47_07215	0.87	-0.0
1,528,190	-		IAI47_07215	0.87	-2.6
1,528,246	+		IAI47_07215	0.89	+2.2
1,528,246	+		IAI47_07215	0.89	+1.0
1,528,273	+				+0.2
1,528,274	-				-0.1
1,528,291	+				+3.0
1,528,310	-				-1.1
1,528,360	+				-1.1
1,528,360	+				-1.6
1,528,371	+				-0.0
1,528,371	+				-0.8
1,528,372	-				+0.1
1,528,372	-				-2.1
1,528,372	-				+1.8
1,528,372	-				+1.3
1,528,391	+				-1.4
1,528,391	+				+2.9
1,528,391	+				+0.3
1,528,392	-				+0.4
1,528,392	-				-2.9
1,528,392	-				+0.9
1,528,392	-				-2.0
1,528,474	+				-0.7
1,528,488	+				+2.6
1,528,497	-				+2.4
1,528,532	+				-2.3
1,528,532	+				-1.5
1,528,532	+				-0.6
1,528,533	-				-0.3
1,528,545	+				-0.6
1,528,546	-				-0.4
1,528,546	-				-0.4
1,528,546	-				+1.0
1,528,546	-				-0.4
1,528,626	+				+0.4
1,528,626	+				-0.1
1,528,627	-				+1.4
1,528,627	-				-2.6
1,528,631	-				+0.6
1,528,711	+		IAI47_07220	0.11	+1.6
1,528,751	+		IAI47_07220	0.17	+0.2
1,528,752	-		IAI47_07220	0.17	+0.5
1,528,752	-		IAI47_07220	0.17	+1.7
1,528,752	-		IAI47_07220	0.17	-1.8
1,528,752	-		IAI47_07220	0.17	+1.6
1,528,752	-		IAI47_07220	0.17	-1.1
1,528,805	+		IAI47_07220	0.24	+2.8
1,528,806	-		IAI47_07220	0.24	-0.0
1,528,870	+		IAI47_07220	0.33	+1.8
1,528,870	+		IAI47_07220	0.33	+1.3
1,528,870	+		IAI47_07220	0.33	-0.6
1,528,870	+		IAI47_07220	0.33	+2.0
1,528,871	-		IAI47_07220	0.33	-2.5
1,528,871	-		IAI47_07220	0.33	+3.5
1,528,879	-		IAI47_07220	0.34	-2.4
1,528,890	-		IAI47_07220	0.36	+0.6
1,528,899	-		IAI47_07220	0.37	-2.0
1,528,903	+		IAI47_07220	0.37	+0.9
1,528,903	+		IAI47_07220	0.37	-0.3
1,528,903	+		IAI47_07220	0.37	-0.5
1,528,903	+		IAI47_07220	0.37	+1.2
1,528,903	+		IAI47_07220	0.37	-2.1
1,528,903	+		IAI47_07220	0.37	+0.7
1,528,903	+		IAI47_07220	0.37	+0.2
1,528,903	+		IAI47_07220	0.37	-1.1
1,528,903	+		IAI47_07220	0.37	-0.0
1,528,903	+		IAI47_07220	0.37	+2.6
1,528,903	+		IAI47_07220	0.37	+0.4
1,528,904	-		IAI47_07220	0.38	+2.6
1,528,904	-		IAI47_07220	0.38	-1.2
1,528,904	-		IAI47_07220	0.38	-0.4
1,528,904	-		IAI47_07220	0.38	-0.2
1,528,904	-		IAI47_07220	0.38	+0.9
1,528,907	+		IAI47_07220	0.38	-1.6
1,528,907	+		IAI47_07220	0.38	+2.9
1,528,907	+		IAI47_07220	0.38	-1.4
1,528,907	+		IAI47_07220	0.38	-0.6
1,528,907	+		IAI47_07220	0.38	-0.4
1,528,908	-		IAI47_07220	0.38	+0.4
1,528,908	-		IAI47_07220	0.38	-0.6
1,528,908	-		IAI47_07220	0.38	-0.5
1,528,908	-		IAI47_07220	0.38	+1.7
1,528,908	-		IAI47_07220	0.38	-1.6
1,528,908	-		IAI47_07220	0.38	-0.1
1,528,908	-		IAI47_07220	0.38	+0.1
1,528,927	+		IAI47_07220	0.41	+2.8
1,528,928	-		IAI47_07220	0.41	-0.7
1,528,928	-		IAI47_07220	0.41	+1.1
1,528,969	+		IAI47_07220	0.46	-0.6
1,528,970	-		IAI47_07220	0.47	+1.0
1,529,000	+		IAI47_07220	0.51	+1.7
1,529,039	+		IAI47_07220	0.56	-2.7
1,529,116	+		IAI47_07220	0.67	-1.6
1,529,116	+		IAI47_07220	0.67	+1.2
1,529,116	+		IAI47_07220	0.67	-1.1
1,529,117	-		IAI47_07220	0.67	-0.9
1,529,117	-		IAI47_07220	0.67	-1.9
1,529,117	-		IAI47_07220	0.67	-3.0
1,529,117	-		IAI47_07220	0.67	-0.3
1,529,183	+		IAI47_07220	0.76	+2.2
1,529,183	+		IAI47_07220	0.76	-0.4
1,529,184	-		IAI47_07220	0.76	+0.2
1,529,279	+		IAI47_07220	0.89	-1.5
1,529,279	+		IAI47_07220	0.89	-1.5
1,529,280	-		IAI47_07220	0.89	-0.9
1,529,280	-		IAI47_07220	0.89	-0.9
1,529,353	+				-1.5
1,529,353	+				-1.9
1,529,353	+				-2.0
1,529,353	+				+2.0
1,529,353	+				+3.2
1,529,353	+				-0.4
1,529,353	+				+0.2
1,529,353	+				-0.9
1,529,353	+				+1.2
1,529,353	+				-2.2
1,529,353	+				-2.9
1,529,353	+				-1.5
1,529,353	+				+2.8
1,529,353	+				-1.1
1,529,353	+				-1.7
1,529,354	-				+0.5
1,529,354	-				-1.5
1,529,354	-				-0.7
1,529,354	-				+4.2
1,529,354	-				-1.9
1,529,354	-				+0.3
1,529,354	-				-3.0
1,529,354	-				+1.2
1,529,354	-				+0.9
1,529,360	+				-0.7
1,529,361	-				+1.7
1,529,361	-				-0.7
1,529,361	-				+2.0
1,529,378	+				-0.1
1,529,378	+				-1.2
1,529,379	-				+2.4
1,529,379	-				-0.8
1,529,379	-				+1.0
1,529,450	+				+1.6