Strain Fitness in Pantoea sp. MT58 around IAI47_05040

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,062,938	-				+1.3
1,062,940	+				+2.2
1,062,940	+				+1.2
1,062,940	+				+2.2
1,062,940	+				-1.3
1,062,940	+				-1.1
1,062,940	+				-0.7
1,062,941	-				+1.8
1,062,941	-				+1.6
1,062,941	-				+2.0
1,062,941	-				-0.3
1,063,073	+				+0.0
1,063,074	-				+1.1
1,063,074	-				+1.3
1,063,087	-				-2.0
1,063,087	-				-0.7
1,063,157	-				+2.3
1,063,157	-				+2.7
1,063,160	+				-2.0
1,063,160	+				-1.8
1,063,160	+				-1.5
1,063,160	+				-0.1
1,063,160	+				+2.3
1,063,160	+				-0.5
1,063,160	+				+2.0
1,063,160	+				-2.7
1,063,160	+				-0.5
1,063,160	+				+0.0
1,063,161	-				-2.9
1,063,161	-				-1.8
1,063,161	-				+1.5
1,063,161	-				+2.4
1,063,161	-				-0.7
1,063,161	-				+1.3
1,063,161	-				+0.5
1,063,240	+				+0.2
1,063,240	+				+0.3
1,063,242	+				+0.7
1,063,243	-				-0.0
1,063,260	-				-1.0
1,063,335	-				+1.3
1,063,376	+		IAI47_05035	0.15	+1.3
1,063,380	+		IAI47_05035	0.16	+1.7
1,063,381	-		IAI47_05035	0.16	+3.7
1,063,381	-		IAI47_05035	0.16	+1.3
1,063,381	-		IAI47_05035	0.16	+0.7
1,063,381	-		IAI47_05035	0.16	+1.3
1,063,381	-		IAI47_05035	0.16	-0.7
1,063,381	-		IAI47_05035	0.16	+0.0
1,063,381	-		IAI47_05035	0.16	-1.4
1,063,381	-				+1.3
1,063,461	+				+1.3
1,063,461	+		IAI47_05035	0.35	-0.3
1,063,531	+		IAI47_05035	0.51	+0.6
1,063,629	+		IAI47_05035	0.74	+0.0
1,063,702	-				+5.1
1,063,733	+				-2.3
1,063,761	+				+3.3
1,063,762	-				-1.7
1,063,762	-				-1.8
1,063,786	+				-2.3
1,063,810	-				-2.0
1,063,828	+				+0.3
1,063,828	+				+0.0
1,063,828	+				-0.3
1,063,828	+				+0.8
1,063,829	-				+2.6
1,063,829	-				+0.0
1,063,829	-				-1.4
1,063,829	-				-0.3
1,063,829	-				+0.9
1,063,834	-				-0.3
1,063,834	-				-0.7
1,063,858	-				+0.7
1,063,881	+				-1.0
1,063,881	+				-1.3
1,063,881	+				-0.8
1,063,882	-				-1.0
1,063,882	-				+1.1
1,063,882	-				+2.5
1,063,882	-				+2.5
1,063,906	+				-1.5
1,063,906	+				+0.3
1,063,907	-				-0.3
1,063,925	+				-2.5
1,063,925	+				+0.8
1,063,925	+				+1.1
1,063,926	-				+0.0
1,063,926	-				-1.9
1,063,926	-				-1.6
1,063,926	-				+0.8
1,063,928	+				+2.5
1,063,928	+				+1.1
1,063,928	+				+1.3
1,063,928	+				-2.7
1,063,928	+				-0.9
1,063,928	+				+1.0
1,063,928	+				+1.6
1,063,929	-				+0.3
1,063,929	-				+0.3
1,063,929	-				-2.1
1,063,929	-				+2.1
1,063,996	+				-1.5
1,064,091	+		IAI47_05040	0.14	+1.0
1,064,091	+		IAI47_05040	0.14	-0.3
1,064,091	+		IAI47_05040	0.14	+0.9
1,064,091	+		IAI47_05040	0.14	+1.4
1,064,092	-		IAI47_05040	0.14	+2.3
1,064,092	-		IAI47_05040	0.14	-1.0
1,064,092	-		IAI47_05040	0.14	-0.8
1,064,098	-		IAI47_05040	0.14	-0.3
1,064,098	-		IAI47_05040	0.14	+1.3
1,064,222	+		IAI47_05040	0.25	-1.3
1,064,222	+		IAI47_05040	0.25	-2.6
1,064,222	+		IAI47_05040	0.25	-2.0
1,064,222	+		IAI47_05040	0.25	-0.7
1,064,222	+		IAI47_05040	0.25	+0.7
1,064,223	-		IAI47_05040	0.25	+0.3
1,064,223	-		IAI47_05040	0.25	-1.1
1,064,223	-		IAI47_05040	0.25	-1.7
1,064,266	-		IAI47_05040	0.29	-0.5
1,064,266	-		IAI47_05040	0.29	+2.2
1,064,266	-		IAI47_05040	0.29	+0.0
1,064,330	+		IAI47_05040	0.34	-0.8
1,064,331	-		IAI47_05040	0.34	+0.1
1,064,366	+		IAI47_05040	0.37	-2.3
1,064,387	+		IAI47_05040	0.39	-1.0
1,064,388	-		IAI47_05040	0.39	-0.5
1,064,450	+		IAI47_05040	0.45	+0.7
1,064,450	+		IAI47_05040	0.45	+0.4
1,064,450	+		IAI47_05040	0.45	+0.6
1,064,451	-		IAI47_05040	0.45	-0.7
1,064,451	-		IAI47_05040	0.45	+0.0
1,064,451	-		IAI47_05040	0.45	+2.8
1,064,501	+		IAI47_05040	0.49	-0.3
1,064,501	+		IAI47_05040	0.49	-1.1
1,064,566	+		IAI47_05040	0.54	-0.3
1,064,567	-		IAI47_05040	0.55	-0.3
1,064,615	+		IAI47_05040	0.59	+0.7
1,064,615	+		IAI47_05040	0.59	-1.1
1,064,615	+		IAI47_05040	0.59	-0.5
1,064,616	-		IAI47_05040	0.59	-1.0
1,064,616	-		IAI47_05040	0.59	+1.3
1,064,616	-		IAI47_05040	0.59	-2.1
1,064,616	-		IAI47_05040	0.59	+5.1
1,064,702	+		IAI47_05040	0.66	+0.0
1,064,703	-		IAI47_05040	0.66	-0.8
1,064,733	+		IAI47_05040	0.69	-0.8
1,064,733	+		IAI47_05040	0.69	-2.1
1,064,733	+		IAI47_05040	0.69	+1.0
1,064,733	+		IAI47_05040	0.69	+0.2
1,064,733	+		IAI47_05040	0.69	-2.1
1,064,734	-		IAI47_05040	0.69	-0.3
1,064,734	-		IAI47_05040	0.69	+1.3
1,064,734	-		IAI47_05040	0.69	-1.0
1,064,778	+		IAI47_05040	0.73	+1.8
1,064,778	+		IAI47_05040	0.73	+0.0
1,064,778	+		IAI47_05040	0.73	-0.3
1,064,778	+		IAI47_05040	0.73	-2.0
1,064,778	+		IAI47_05040	0.73	-0.9
1,064,778	+		IAI47_05040	0.73	+0.0
1,064,779	-		IAI47_05040	0.73	-0.8
1,064,779	-		IAI47_05040	0.73	-3.1
1,064,779	-		IAI47_05040	0.73	-0.3
1,064,779	-		IAI47_05040	0.73	-0.3
1,064,906	+		IAI47_05040	0.84	+1.6
1,064,912	+		IAI47_05040	0.84	-1.6
1,064,912	+		IAI47_05040	0.84	+0.7
1,064,913	-		IAI47_05040	0.84	+0.1
1,064,913	-		IAI47_05040	0.84	-1.7
1,064,952	+		IAI47_05040	0.87	+0.3
1,064,952	+		IAI47_05040	0.87	-2.1
1,064,953	-		IAI47_05040	0.88	+2.4
1,064,953	-		IAI47_05040	0.88	+0.2
1,064,953	-		IAI47_05040	0.88	+2.2
1,064,953	-		IAI47_05040	0.88	-0.8
1,064,953	-		IAI47_05040	0.88	-2.0
1,064,960	+		IAI47_05040	0.88	-0.3
1,064,961	-		IAI47_05040	0.88	-2.4
1,064,961	-		IAI47_05040	0.88	-1.6
1,064,975	+		IAI47_05040	0.89	+1.3
1,064,976	-		IAI47_05040	0.89	-0.3
1,065,038	+				-2.4
1,065,079	+				+0.6
1,065,080	-				+0.5
1,065,080	-				-1.2
1,065,080	-				+0.6
1,065,081	+				+2.2
1,065,096	+				+1.6
1,065,096	+				+2.3
1,065,097	-				+2.7
1,065,097	-				-1.3
1,065,097	-				+0.0
1,065,097	-				-1.3
1,065,184	+				+0.9
1,065,184	+				-2.2
1,065,193	-				-1.4
1,065,193	-				+0.5
1,065,222	+				-1.5
1,065,222	+				-0.8
1,065,222	+				-0.0
1,065,223	-				+0.4
1,065,223	-				+0.7
1,065,223	-				+0.0
1,065,280	-		IAI47_05045	0.14	+1.9
1,065,280	-		IAI47_05045	0.14	+0.7
1,065,280	-		IAI47_05045	0.14	-0.8
1,065,290	+		IAI47_05045	0.15	+0.4
1,065,290	+		IAI47_05045	0.15	-0.5
1,065,290	+		IAI47_05045	0.15	+1.2
1,065,290	+		IAI47_05045	0.15	-0.8
1,065,290	+		IAI47_05045	0.15	+0.6
1,065,290	+		IAI47_05045	0.15	+0.2
1,065,433	+		IAI47_05045	0.35	-0.5
1,065,434	-		IAI47_05045	0.35	-1.3
1,065,436	-		IAI47_05045	0.35	-0.5
1,065,436	-		IAI47_05045	0.35	-0.1
1,065,476	-		IAI47_05045	0.40	-1.0
1,065,482	+		IAI47_05045	0.41	+0.0
1,065,482	+		IAI47_05045	0.41	-0.5
1,065,483	-		IAI47_05045	0.41	-1.3
1,065,505	-		IAI47_05045	0.44	+0.7
1,065,505	-		IAI47_05045	0.44	+0.2
1,065,512	+		IAI47_05045	0.45	+1.7
1,065,602	+		IAI47_05045	0.58	-1.3
1,065,603	-		IAI47_05045	0.58	-1.5
1,065,642	+		IAI47_05045	0.63	+1.0
1,065,643	-		IAI47_05045	0.63	-1.1
1,065,670	+		IAI47_05045	0.67	+1.3
1,065,671	-		IAI47_05045	0.67	-1.4
1,065,671	-		IAI47_05045	0.67	+1.5
1,065,715	+		IAI47_05045	0.73	-0.3
1,065,715	+		IAI47_05045	0.73	+0.5
1,065,715	+		IAI47_05045	0.73	-0.5
1,065,715	+		IAI47_05045	0.73	-1.3
1,065,715	+		IAI47_05045	0.73	+0.7
1,065,716	-		IAI47_05045	0.73	-1.7
1,065,716	-		IAI47_05045	0.73	+1.8
1,065,753	-		IAI47_05045	0.78	-1.0
1,065,792	+		IAI47_05045	0.83	+1.3
1,065,792	+		IAI47_05045	0.83	+1.3
1,065,793	-		IAI47_05045	0.84	-1.1
1,065,798	+		IAI47_05045	0.84	+1.6
1,065,798	+		IAI47_05045	0.84	+0.5
1,065,798	+		IAI47_05045	0.84	-0.3
1,065,798	+		IAI47_05045	0.84	-3.4
1,065,798	+		IAI47_05045	0.84	+1.1
1,065,798	+		IAI47_05045	0.84	+2.0
1,065,799	-		IAI47_05045	0.84	-0.3
1,065,799	-		IAI47_05045	0.84	+0.0
1,065,799	-		IAI47_05045	0.84	-1.1
1,065,814	-		IAI47_05045	0.86	-1.6
1,065,843	-				-0.7
1,065,879	+				-1.1
1,065,879	+				-2.8
1,065,880	-				-0.4
1,065,880	-				-2.4
1,065,880	-				-0.9
1,065,884	+				+2.9
1,065,885	-				+1.3
1,065,893	+				-1.8
1,065,894	-				-1.1
1,065,894	-				-3.6
1,065,894	-				+0.0
1,065,897	+				+0.0
1,065,897	+				+1.1
1,065,897	+				-1.3
1,065,898	-				-0.7
1,065,898	-				-2.0
1,065,901	+				-0.5
1,065,902	-				+0.8
1,065,908	+				-2.5
1,065,937	+				-0.8
1,065,937	+				-0.8
1,065,937	+				+0.7
1,065,937	+				-0.3
1,066,069	+		IAI47_05050	0.16	-2.3
1,066,092	+		IAI47_05050	0.19	-1.3
1,066,092	+		IAI47_05050	0.19	+1.6
1,066,092	+		IAI47_05050	0.19	-1.6
1,066,093	-		IAI47_05050	0.19	-2.3