Strain Fitness in Pantoea sp. MT58 around IAI47_05005

Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
1,050,483	+		IAI47_04995	0.69	-1.5
1,050,484	-		IAI47_04995	0.69	+2.6
1,050,528	+		IAI47_04995	0.75	-3.0
1,050,528	+		IAI47_04995	0.75	+0.3
1,050,529	-		IAI47_04995	0.75	+0.7
1,050,529	-		IAI47_04995	0.75	+0.3
1,050,536	+		IAI47_04995	0.76	+0.9
1,050,536	+		IAI47_04995	0.76	-0.8
1,050,536	+		IAI47_04995	0.76	-2.0
1,050,537	-		IAI47_04995	0.76	+2.8
1,050,537	-		IAI47_04995	0.76	-0.8
1,050,537	-		IAI47_04995	0.76	+1.6
1,050,578	+		IAI47_04995	0.81	-2.4
1,050,579	-		IAI47_04995	0.81	+2.3
1,050,599	+		IAI47_04995	0.84	-2.2
1,050,599	+		IAI47_04995	0.84	-1.8
1,050,613	+		IAI47_04995	0.86	+0.3
1,050,613	+		IAI47_04995	0.86	+0.5
1,050,614	-		IAI47_04995	0.86	-1.3
1,050,614	-		IAI47_04995	0.86	+2.1
1,050,614	-		IAI47_04995	0.86	-2.1
1,050,615	+		IAI47_04995	0.86	+1.3
1,050,615	+		IAI47_04995	0.86	+2.5
1,050,616	-		IAI47_04995	0.86	+1.8
1,050,616	-		IAI47_04995	0.86	+0.7
1,050,616	-		IAI47_04995	0.86	-1.0
1,050,710	+				-0.5
1,050,711	-				+1.6
1,050,714	-				-0.8
1,050,738	+				-1.4
1,050,759	+				+1.7
1,050,763	+				-2.0
1,050,763	+				-0.8
1,050,811	+				-0.6
1,050,811	+				-1.5
1,050,811	+				-0.3
1,050,811	+				-0.3
1,050,834	-				+0.3
1,050,834	-				-1.3
1,050,834	-				+2.0
1,050,849	+				-3.1
1,050,849	+				-0.8
1,050,849	+				-0.0
1,050,850	-				+0.3
1,050,850	-				-0.8
1,050,874	+				+1.7
1,050,875	-				-1.1
1,050,939	+		IAI47_05000	0.18	+0.0
1,050,970	+		IAI47_05000	0.24	+2.4
1,050,970	+		IAI47_05000	0.24	-2.4
1,050,970	+		IAI47_05000	0.24	-1.4
1,050,970	+		IAI47_05000	0.24	-0.8
1,050,983	+		IAI47_05000	0.27	-0.3
1,050,983	+		IAI47_05000	0.27	+0.7
1,050,999	+		IAI47_05000	0.30	-1.6
1,051,042	+		IAI47_05000	0.39	-1.0
1,051,042	+		IAI47_05000	0.39	+1.1
1,051,049	+		IAI47_05000	0.40	-2.0
1,051,049	+		IAI47_05000	0.40	-1.4
1,051,053	+		IAI47_05000	0.41	-1.8
1,051,053	+		IAI47_05000	0.41	+3.8
1,051,089	+		IAI47_05000	0.48	+0.7
1,051,172	+		IAI47_05000	0.65	-0.2
1,051,172	+		IAI47_05000	0.65	-1.4
1,051,218	+		IAI47_05000	0.74	-0.3
1,051,218	+		IAI47_05000	0.74	+2.4
1,051,218	+		IAI47_05000	0.74	-1.0
1,051,218	+		IAI47_05000	0.74	-1.4
1,051,218	+		IAI47_05000	0.74	-2.0
1,051,221	+		IAI47_05000	0.74	-1.4
1,051,221	+		IAI47_05000	0.74	+0.5
1,051,221	+		IAI47_05000	0.74	+2.7
1,051,221	+		IAI47_05000	0.74	+0.7
1,051,221	+		IAI47_05000	0.74	-1.5
1,051,243	-		IAI47_05000	0.79	+1.3
1,051,287	+		IAI47_05000	0.88	-1.1
1,051,288	-		IAI47_05000	0.88	-0.8
1,051,288	-		IAI47_05000	0.88	-2.2
1,051,323	+				+1.9
1,051,323	+				+1.1
1,051,323	+				-1.8
1,051,323	+				+2.0
1,051,323	+				+1.7
1,051,323	+				+2.3
1,051,324	-				-2.1
1,051,324	-				-1.1
1,051,324	-				-2.9
1,051,324	-				+0.2
1,051,324	-				-2.3
1,051,324	-				-1.9
1,051,397	+				-2.1
1,051,397	+				+2.6
1,051,399	+				+2.6
1,051,399	+				+1.1
1,051,399	+				-2.1
1,051,399	+				+2.0
1,051,407	+				+2.6
1,051,407	+				+1.9
1,051,407	+				-2.2
1,052,627	+				-2.4
1,052,628	-				-2.7
1,052,628	-				-1.4
1,052,628	-				-1.3
1,052,628	-				+1.9
1,052,665	-				+0.8
1,052,665	-				-1.3
1,052,665	-				+0.8
1,052,684	+				-1.1
1,052,685	-				+0.0
1,052,691	-				+2.9
1,052,698	+				-1.6
1,052,699	-				+1.3
1,052,702	-				+1.2
1,052,711	-				-2.4
1,052,712	+				+1.2
1,052,738	-				-1.8
1,052,738	-				+1.6
1,052,738	-				-3.2
1,052,781	+				+2.6
1,052,781	+				+1.2
1,052,781	+				-0.8
1,052,781	+				+1.3
1,052,782	-				+1.3
1,052,788	-				-0.7
1,052,788	-				+1.3
1,052,788	-				+0.6
1,052,788	-				+0.8
1,052,886	+				+0.7
1,052,886	+				-2.5
1,052,886	+				+1.8
1,052,886	+				-0.3
1,052,887	-		IAI47_05010	0.10	+2.7
1,052,887	-		IAI47_05010	0.10	+0.8
1,053,102	+		IAI47_05010	0.27	+3.5
1,053,102	+		IAI47_05010	0.27	-2.0
1,053,102	+		IAI47_05010	0.27	-0.3
1,053,103	-		IAI47_05010	0.27	+0.0
1,053,103	-		IAI47_05010	0.27	-1.0
1,053,190	+		IAI47_05010	0.34	+0.7
1,053,190	+		IAI47_05010	0.34	+0.4
1,053,190	+		IAI47_05010	0.34	-1.8
1,053,190	+		IAI47_05010	0.34	+0.9
1,053,190	+		IAI47_05010	0.34	+0.0
1,053,191	-		IAI47_05010	0.34	+0.0
1,053,191	-		IAI47_05010	0.34	+0.5
1,053,195	+		IAI47_05010	0.34	-0.8
1,053,195	+		IAI47_05010	0.34	+0.4
1,053,195	+		IAI47_05010	0.34	-1.0
1,053,195	+		IAI47_05010	0.34	+0.7
1,053,196	-		IAI47_05010	0.34	+1.9
1,053,198	+		IAI47_05010	0.34	-1.6
1,053,198	+		IAI47_05010	0.34	-0.2
1,053,198	+		IAI47_05010	0.34	-1.3
1,053,198	+		IAI47_05010	0.34	+1.5
1,053,198	+		IAI47_05010	0.34	+2.3
1,053,199	-		IAI47_05010	0.34	-3.0
1,053,199	-		IAI47_05010	0.34	+0.6
1,053,199	-		IAI47_05010	0.34	+1.2
1,053,229	+		IAI47_05010	0.37	-1.7
1,053,229	+		IAI47_05010	0.37	-3.0
1,053,229	+		IAI47_05010	0.37	+1.2
1,053,229	+		IAI47_05010	0.37	-0.3
1,053,229	+		IAI47_05010	0.37	+1.3
1,053,229	+		IAI47_05010	0.37	+1.2
1,053,230	-		IAI47_05010	0.37	+1.0
1,053,230	-		IAI47_05010	0.37	+0.3
1,053,230	-		IAI47_05010	0.37	-1.0
1,053,230	-		IAI47_05010	0.37	+3.5
1,053,230	-		IAI47_05010	0.37	-2.3
1,053,230	-		IAI47_05010	0.37	-1.0
1,053,230	-		IAI47_05010	0.37	+1.4
1,053,230	-		IAI47_05010	0.37	+2.3
1,053,230	-		IAI47_05010	0.37	+2.7
1,053,231	+		IAI47_05010	0.37	+0.7
1,053,231	+		IAI47_05010	0.37	-2.0
1,053,231	+		IAI47_05010	0.37	-0.1
1,053,231	+		IAI47_05010	0.37	-1.5
1,053,231	+		IAI47_05010	0.37	-3.0
1,053,231	+		IAI47_05010	0.37	-1.0
1,053,231	+		IAI47_05010	0.37	-0.7
1,053,231	+		IAI47_05010	0.37	-2.3
1,053,231	+		IAI47_05010	0.37	-1.7
1,053,231	+		IAI47_05010	0.37	-1.8
1,053,232	-		IAI47_05010	0.37	-1.7
1,053,232	-		IAI47_05010	0.37	-2.0
1,053,232	-		IAI47_05010	0.37	-1.5
1,053,232	-		IAI47_05010	0.37	+0.9
1,053,232	-		IAI47_05010	0.37	+1.7
1,053,232	-		IAI47_05010	0.37	+2.3
1,053,243	+		IAI47_05010	0.38	-0.1
1,053,243	+		IAI47_05010	0.38	+0.3
1,053,243	+		IAI47_05010	0.38	-2.1
1,053,243	+		IAI47_05010	0.38	-2.4
1,053,243	+		IAI47_05010	0.38	-1.8
1,053,243	+		IAI47_05010	0.38	+0.7
1,053,244	-		IAI47_05010	0.38	-1.1
1,053,244	-		IAI47_05010	0.38	+2.1
1,053,244	-		IAI47_05010	0.38	+2.9
1,053,278	-		IAI47_05010	0.40	+0.6
1,053,292	+		IAI47_05010	0.41	+1.5
1,053,292	+		IAI47_05010	0.41	-1.6
1,053,326	-		IAI47_05010	0.44	-1.8
1,053,343	-		IAI47_05010	0.45	+1.2
1,053,351	+		IAI47_05010	0.46	+2.2
1,053,351	+		IAI47_05010	0.46	+2.1
1,053,351	+		IAI47_05010	0.46	-0.8
1,053,351	+		IAI47_05010	0.46	-0.7
1,053,352	-		IAI47_05010	0.46	-2.8
1,053,352	-		IAI47_05010	0.46	+0.0
1,053,352	-		IAI47_05010	0.46	+3.0
1,053,352	-		IAI47_05010	0.46	-1.0
1,053,393	+		IAI47_05010	0.49	-2.1
1,053,393	+		IAI47_05010	0.49	+1.9
1,053,394	-		IAI47_05010	0.49	-2.3
1,053,394	-		IAI47_05010	0.49	-1.3
1,053,471	+		IAI47_05010	0.55	-2.8
1,053,471	+		IAI47_05010	0.55	-1.5
1,053,472	-		IAI47_05010	0.55	-1.8
1,053,472	-		IAI47_05010	0.55	+1.3
1,053,510	+		IAI47_05010	0.58	-0.3
1,053,510	+		IAI47_05010	0.58	-0.3
1,053,510	+		IAI47_05010	0.58	+0.4
1,053,510	+		IAI47_05010	0.58	+3.6
1,053,510	+		IAI47_05010	0.58	+1.0
1,053,510	+		IAI47_05010	0.58	-1.4
1,053,511	-		IAI47_05010	0.59	-1.6
1,053,511	-		IAI47_05010	0.59	+0.7
1,053,511	-		IAI47_05010	0.59	-2.0
1,053,511	-		IAI47_05010	0.59	+0.6
1,053,511	-		IAI47_05010	0.59	-0.5
1,053,546	+		IAI47_05010	0.61	-1.1
1,053,546	+		IAI47_05010	0.61	+1.2
1,053,546	+		IAI47_05010	0.61	-1.6
1,053,547	-		IAI47_05010	0.61	-1.4
1,053,547	-		IAI47_05010	0.61	+0.0
1,053,547	-		IAI47_05010	0.61	+1.2