Experiment: Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00860 and IAI47_00865 are separated by 164 nucleotides IAI47_00865 and IAI47_00870 are separated by 225 nucleotides IAI47_00870 and IAI47_00875 are separated by 80 nucleotides
IAI47_00860: IAI47_00860 - DNA-binding transcriptional regulator CytR, at 180,325 to 181,362
_00860
IAI47_00865: IAI47_00865 - primosomal protein N', at 181,527 to 183,722
_00865
IAI47_00870: IAI47_00870 - 50S ribosomal protein L31, at 183,948 to 184,163
_00870
IAI47_00875: IAI47_00875 - met regulon transcriptional regulator MetJ, at 184,244 to 184,561
_00875
Position (kb) 181
182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 180.597 kb on + strand, within IAI47_00860 at 180.597 kb on + strand, within IAI47_00860 at 180.597 kb on + strand, within IAI47_00860 at 180.598 kb on - strand, within IAI47_00860 at 180.598 kb on - strand, within IAI47_00860 at 180.598 kb on - strand, within IAI47_00860 at 180.598 kb on - strand, within IAI47_00860 at 180.600 kb on + strand, within IAI47_00860 at 180.600 kb on + strand, within IAI47_00860 at 180.600 kb on + strand, within IAI47_00860 at 180.600 kb on + strand, within IAI47_00860 at 180.600 kb on + strand, within IAI47_00860 at 180.601 kb on - strand, within IAI47_00860 at 180.601 kb on - strand, within IAI47_00860 at 180.601 kb on - strand, within IAI47_00860 at 180.699 kb on + strand, within IAI47_00860 at 180.699 kb on + strand, within IAI47_00860 at 180.699 kb on + strand, within IAI47_00860 at 180.699 kb on + strand, within IAI47_00860 at 180.699 kb on + strand, within IAI47_00860 at 180.699 kb on + strand, within IAI47_00860 at 180.699 kb on + strand, within IAI47_00860 at 180.700 kb on - strand, within IAI47_00860 at 180.700 kb on - strand, within IAI47_00860 at 180.700 kb on - strand, within IAI47_00860 at 180.700 kb on - strand, within IAI47_00860 at 180.700 kb on - strand, within IAI47_00860 at 180.700 kb on - strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.701 kb on + strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.702 kb on - strand, within IAI47_00860 at 180.746 kb on + strand, within IAI47_00860 at 180.746 kb on + strand, within IAI47_00860 at 180.746 kb on + strand, within IAI47_00860 at 180.746 kb on + strand, within IAI47_00860 at 180.746 kb on + strand, within IAI47_00860 at 180.746 kb on + strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.747 kb on - strand, within IAI47_00860 at 180.755 kb on - strand, within IAI47_00860 at 180.796 kb on - strand, within IAI47_00860 at 180.810 kb on + strand, within IAI47_00860 at 180.810 kb on + strand, within IAI47_00860 at 180.810 kb on + strand, within IAI47_00860 at 180.811 kb on - strand, within IAI47_00860 at 180.811 kb on - strand, within IAI47_00860 at 180.811 kb on - strand, within IAI47_00860 at 180.811 kb on - strand, within IAI47_00860 at 180.811 kb on - strand, within IAI47_00860 at 180.818 kb on - strand, within IAI47_00860 at 180.818 kb on - strand, within IAI47_00860 at 181.014 kb on + strand, within IAI47_00860 at 181.014 kb on + strand, within IAI47_00860 at 181.070 kb on + strand, within IAI47_00860 at 181.070 kb on + strand, within IAI47_00860 at 181.070 kb on + strand, within IAI47_00860 at 181.070 kb on + strand, within IAI47_00860 at 181.070 kb on + strand, within IAI47_00860 at 181.070 kb on + strand, within IAI47_00860 at 181.071 kb on - strand, within IAI47_00860 at 181.071 kb on - strand, within IAI47_00860 at 181.071 kb on - strand, within IAI47_00860 at 181.117 kb on - strand, within IAI47_00860 at 181.158 kb on + strand, within IAI47_00860 at 181.159 kb on - strand, within IAI47_00860 at 181.170 kb on + strand, within IAI47_00860 at 181.170 kb on + strand, within IAI47_00860 at 181.205 kb on + strand, within IAI47_00860 at 181.237 kb on - strand, within IAI47_00860 at 181.237 kb on - strand, within IAI47_00860 at 181.237 kb on - strand, within IAI47_00860 at 181.286 kb on - strand at 181.382 kb on - strand at 181.382 kb on - strand at 181.438 kb on - strand at 181.459 kb on + strand at 181.459 kb on + strand at 181.459 kb on + strand at 181.463 kb on + strand at 181.464 kb on - strand at 181.486 kb on + strand at 181.486 kb on + strand at 181.487 kb on - strand at 181.487 kb on - strand at 183.715 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.723 kb on - strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.757 kb on + strand at 183.758 kb on - strand at 183.758 kb on - strand at 183.758 kb on - strand at 183.758 kb on - strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.762 kb on + strand at 183.763 kb on - strand at 183.763 kb on - strand at 183.763 kb on - strand at 183.763 kb on - strand at 183.786 kb on - strand at 183.862 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.869 kb on + strand at 183.871 kb on + strand at 183.871 kb on + strand at 183.871 kb on + strand at 184.127 kb on + strand, within IAI47_00870 at 184.128 kb on - strand, within IAI47_00870 at 184.161 kb on + strand at 184.161 kb on + strand at 184.167 kb on + strand at 184.167 kb on + strand at 184.167 kb on + strand at 184.167 kb on + strand at 184.168 kb on - strand at 184.168 kb on - strand at 184.269 kb on - strand at 184.276 kb on + strand, within IAI47_00875 at 184.328 kb on - strand, within IAI47_00875 at 184.478 kb on - strand, within IAI47_00875 at 184.478 kb on - strand, within IAI47_00875 at 184.538 kb on - strand at 184.539 kb on + strand at 184.540 kb on - strand at 184.567 kb on - strand at 184.571 kb on + strand at 184.571 kb on + strand at 184.575 kb on + strand at 184.575 kb on + strand at 184.586 kb on - strand at 184.586 kb on - strand at 184.608 kb on + strand at 184.609 kb on - strand at 184.609 kb on - strand at 184.640 kb on - strand at 184.640 kb on - strand at 184.703 kb on - strand at 184.703 kb on - strand at 184.715 kb on + strand at 184.715 kb on + strand at 184.715 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=GW247 (pH 5.4); TreatmentDuration=24hrs; Outgrowth=LBkan50 remove 180,597 + IAI47_00860 0.26 -1.1 180,597 + IAI47_00860 0.26 +2.2 180,597 + IAI47_00860 0.26 -1.4 180,598 - IAI47_00860 0.26 -1.3 180,598 - IAI47_00860 0.26 -0.2 180,598 - IAI47_00860 0.26 +0.8 180,598 - IAI47_00860 0.26 -1.2 180,600 + IAI47_00860 0.26 +1.1 180,600 + IAI47_00860 0.26 -2.0 180,600 + IAI47_00860 0.26 +2.0 180,600 + IAI47_00860 0.26 -0.1 180,600 + IAI47_00860 0.26 -0.1 180,601 - IAI47_00860 0.27 +2.6 180,601 - IAI47_00860 0.27 -2.4 180,601 - IAI47_00860 0.27 -2.4 180,699 + IAI47_00860 0.36 -1.3 180,699 + IAI47_00860 0.36 +3.1 180,699 + IAI47_00860 0.36 -2.8 180,699 + IAI47_00860 0.36 +0.0 180,699 + IAI47_00860 0.36 -3.3 180,699 + IAI47_00860 0.36 +1.6 180,699 + IAI47_00860 0.36 -1.8 180,700 - IAI47_00860 0.36 -3.2 180,700 - IAI47_00860 0.36 -1.4 180,700 - IAI47_00860 0.36 +2.3 180,700 - IAI47_00860 0.36 -0.3 180,700 - IAI47_00860 0.36 +2.2 180,700 - IAI47_00860 0.36 +2.1 180,701 + IAI47_00860 0.36 -1.5 180,701 + IAI47_00860 0.36 -1.4 180,701 + IAI47_00860 0.36 -2.7 180,701 + IAI47_00860 0.36 +0.6 180,701 + IAI47_00860 0.36 -2.0 180,701 + IAI47_00860 0.36 -1.9 180,701 + IAI47_00860 0.36 -1.8 180,701 + IAI47_00860 0.36 +0.4 180,701 + IAI47_00860 0.36 -1.5 180,701 + IAI47_00860 0.36 -1.7 180,701 + IAI47_00860 0.36 -2.1 180,701 + IAI47_00860 0.36 +0.6 180,701 + IAI47_00860 0.36 +2.0 180,701 + IAI47_00860 0.36 +3.0 180,701 + IAI47_00860 0.36 +0.0 180,701 + IAI47_00860 0.36 -2.1 180,701 + IAI47_00860 0.36 +1.7 180,701 + IAI47_00860 0.36 +1.4 180,702 - IAI47_00860 0.36 -0.4 180,702 - IAI47_00860 0.36 +0.2 180,702 - IAI47_00860 0.36 -2.2 180,702 - IAI47_00860 0.36 +1.3 180,702 - IAI47_00860 0.36 +1.2 180,702 - IAI47_00860 0.36 -1.0 180,702 - IAI47_00860 0.36 +1.9 180,702 - IAI47_00860 0.36 +1.3 180,702 - IAI47_00860 0.36 -1.9 180,702 - IAI47_00860 0.36 -1.5 180,702 - IAI47_00860 0.36 +1.9 180,702 - IAI47_00860 0.36 +1.2 180,702 - IAI47_00860 0.36 -0.5 180,702 - IAI47_00860 0.36 +3.9 180,702 - IAI47_00860 0.36 +0.7 180,702 - IAI47_00860 0.36 -0.8 180,702 - IAI47_00860 0.36 -0.4 180,702 - IAI47_00860 0.36 +1.3 180,702 - IAI47_00860 0.36 +0.4 180,702 - IAI47_00860 0.36 +0.3 180,702 - IAI47_00860 0.36 -0.6 180,702 - IAI47_00860 0.36 +3.3 180,702 - IAI47_00860 0.36 +1.6 180,702 - IAI47_00860 0.36 -0.6 180,746 + IAI47_00860 0.41 +0.0 180,746 + IAI47_00860 0.41 +2.8 180,746 + IAI47_00860 0.41 -1.7 180,746 + IAI47_00860 0.41 +0.5 180,746 + IAI47_00860 0.41 -0.6 180,746 + IAI47_00860 0.41 -0.2 180,747 - IAI47_00860 0.41 -1.7 180,747 - IAI47_00860 0.41 -2.8 180,747 - IAI47_00860 0.41 -1.7 180,747 - IAI47_00860 0.41 +1.2 180,747 - IAI47_00860 0.41 -1.3 180,747 - IAI47_00860 0.41 -2.7 180,747 - IAI47_00860 0.41 -1.2 180,747 - IAI47_00860 0.41 -1.8 180,755 - IAI47_00860 0.41 +0.3 180,796 - IAI47_00860 0.45 +0.4 180,810 + IAI47_00860 0.47 -1.7 180,810 + IAI47_00860 0.47 -0.5 180,810 + IAI47_00860 0.47 +2.1 180,811 - IAI47_00860 0.47 +2.7 180,811 - IAI47_00860 0.47 -0.1 180,811 - IAI47_00860 0.47 +0.5 180,811 - IAI47_00860 0.47 +0.9 180,811 - IAI47_00860 0.47 +1.6 180,818 - IAI47_00860 0.47 +1.3 180,818 - IAI47_00860 0.47 -1.0 181,014 + IAI47_00860 0.66 +0.3 181,014 + IAI47_00860 0.66 +1.9 181,070 + IAI47_00860 0.72 -1.6 181,070 + IAI47_00860 0.72 -0.5 181,070 + IAI47_00860 0.72 -1.3 181,070 + IAI47_00860 0.72 -2.9 181,070 + IAI47_00860 0.72 +0.1 181,070 + IAI47_00860 0.72 -1.7 181,071 - IAI47_00860 0.72 -0.3 181,071 - IAI47_00860 0.72 -1.6 181,071 - IAI47_00860 0.72 -0.1 181,117 - IAI47_00860 0.76 +0.9 181,158 + IAI47_00860 0.80 +0.5 181,159 - IAI47_00860 0.80 -1.2 181,170 + IAI47_00860 0.81 +2.3 181,170 + IAI47_00860 0.81 +0.3 181,205 + IAI47_00860 0.85 -0.5 181,237 - IAI47_00860 0.88 -1.3 181,237 - IAI47_00860 0.88 +1.8 181,237 - IAI47_00860 0.88 -1.0 181,286 - +5.9 181,382 - +0.9 181,382 - +1.9 181,438 - -0.5 181,459 + -0.8 181,459 + -1.1 181,459 + +2.5 181,463 + -2.0 181,464 - -1.1 181,486 + -2.4 181,486 + -1.1 181,487 - +0.5 181,487 - +1.3 183,715 - +3.1 183,723 - +2.9 183,723 - -1.6 183,723 - +2.3 183,723 - -1.2 183,723 - +2.1 183,757 + +2.8 183,757 + -0.9 183,757 + -1.6 183,757 + +0.9 183,757 + +1.8 183,757 + +3.4 183,758 - -1.5 183,758 - +0.2 183,758 - -1.8 183,758 - +0.6 183,762 + +1.2 183,762 + +0.3 183,762 + +0.5 183,762 + +1.1 183,762 + -1.6 183,763 - -1.3 183,763 - +1.5 183,763 - +2.1 183,763 - +1.0 183,786 - -1.2 183,862 + -0.8 183,869 + -0.3 183,869 + +0.5 183,869 + -1.8 183,869 + -0.7 183,869 + +1.4 183,869 + +0.2 183,869 + +0.2 183,869 + -1.0 183,869 + +2.8 183,869 + -2.4 183,869 + -2.2 183,869 + -0.5 183,869 + -1.8 183,869 + -1.5 183,869 + -1.1 183,869 + +1.5 183,869 + -2.5 183,871 + +1.9 183,871 + -0.3 183,871 + -1.1 184,127 + IAI47_00870 0.83 -0.5 184,128 - IAI47_00870 0.83 -1.1 184,161 + +1.2 184,161 + +0.3 184,167 + -0.1 184,167 + -0.4 184,167 + +2.1 184,167 + -1.1 184,168 - -2.9 184,168 - -1.6 184,269 - -1.8 184,276 + IAI47_00875 0.10 +3.0 184,328 - IAI47_00875 0.26 -2.4 184,478 - IAI47_00875 0.74 -1.0 184,478 - IAI47_00875 0.74 +0.2 184,538 - -0.3 184,539 + +0.5 184,540 - +0.9 184,567 - -0.8 184,571 + +0.2 184,571 + +0.9 184,575 + -2.3 184,575 + -2.4 184,586 - -1.3 184,586 - +0.1 184,608 + +0.5 184,609 - -0.4 184,609 - +0.1 184,640 - -2.5 184,640 - -1.3 184,703 - -1.1 184,703 - +0.9 184,715 + +1.6 184,715 + +1.6 184,715 + +1.3
Or see this region's nucleotide sequence