Experiment: No vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23620 and HSERO_RS23625 are separated by 18 nucleotides HSERO_RS23625 and HSERO_RS23630 are separated by 3 nucleotides HSERO_RS23630 and HSERO_RS23635 are separated by 68 nucleotides HSERO_RS23635 and HSERO_RS23640 are separated by 58 nucleotides
HSERO_RS23620: HSERO_RS23620 - urease subunit alpha, at 5,415,734 to 5,417,434
_RS23620
HSERO_RS23625: HSERO_RS23625 - urease accessory protein UreE, at 5,417,453 to 5,417,986
_RS23625
HSERO_RS23630: HSERO_RS23630 - urease accessory protein UreF, at 5,417,990 to 5,418,670
_RS23630
HSERO_RS23635: HSERO_RS23635 - urease accessory protein UreG, at 5,418,739 to 5,419,371
_RS23635
HSERO_RS23640: HSERO_RS23640 - Ni/Fe hydrogenase, at 5,419,430 to 5,420,041
_RS23640
Position (kb) 5417
5418
5419 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5417.080 kb on - strand, within HSERO_RS23620 at 5417.256 kb on + strand, within HSERO_RS23620 at 5417.357 kb on - strand at 5417.520 kb on - strand, within HSERO_RS23625 at 5417.592 kb on + strand, within HSERO_RS23625 at 5417.600 kb on - strand, within HSERO_RS23625 at 5417.609 kb on + strand, within HSERO_RS23625 at 5417.650 kb on - strand, within HSERO_RS23625 at 5417.980 kb on + strand at 5418.068 kb on + strand, within HSERO_RS23630 at 5418.077 kb on - strand, within HSERO_RS23630 at 5418.110 kb on - strand, within HSERO_RS23630 at 5418.140 kb on - strand, within HSERO_RS23630 at 5418.878 kb on - strand, within HSERO_RS23635 at 5419.035 kb on + strand, within HSERO_RS23635 at 5419.085 kb on + strand, within HSERO_RS23635 at 5419.293 kb on + strand, within HSERO_RS23635 at 5419.626 kb on - strand, within HSERO_RS23640 at 5419.636 kb on - strand, within HSERO_RS23640
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t1 remove 5,417,080 - HSERO_RS23620 0.79 +0.0 5,417,256 + HSERO_RS23620 0.89 -0.4 5,417,357 - +0.3 5,417,520 - HSERO_RS23625 0.13 -0.2 5,417,592 + HSERO_RS23625 0.26 +2.5 5,417,600 - HSERO_RS23625 0.28 -0.0 5,417,609 + HSERO_RS23625 0.29 +0.2 5,417,650 - HSERO_RS23625 0.37 +0.4 5,417,980 + -0.7 5,418,068 + HSERO_RS23630 0.11 -0.6 5,418,077 - HSERO_RS23630 0.13 -0.2 5,418,110 - HSERO_RS23630 0.18 -0.4 5,418,140 - HSERO_RS23630 0.22 -2.3 5,418,878 - HSERO_RS23635 0.22 -1.8 5,419,035 + HSERO_RS23635 0.47 -0.1 5,419,085 + HSERO_RS23635 0.55 -0.6 5,419,293 + HSERO_RS23635 0.88 -0.8 5,419,626 - HSERO_RS23640 0.32 -0.0 5,419,636 - HSERO_RS23640 0.34 -1.5
Or see this region's nucleotide sequence