Experiment: No vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02630 and HSERO_RS02635 are separated by 2 nucleotides HSERO_RS02635 and HSERO_RS02640 are separated by 70 nucleotides HSERO_RS02640 and HSERO_RS02645 are separated by 400 nucleotides
HSERO_RS02630: HSERO_RS02630 - membrane protein, at 576,673 to 577,254
_RS02630
HSERO_RS02635: HSERO_RS02635 - LysR family transcriptional regulator, at 577,257 to 578,177
_RS02635
HSERO_RS02640: HSERO_RS02640 - dihydrofolate reductase, at 578,248 to 579,201
_RS02640
HSERO_RS02645: HSERO_RS02645 - MFS transporter, at 579,602 to 581,056
_RS02645
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 577.278 kb on + strand at 577.363 kb on + strand, within HSERO_RS02635 at 577.464 kb on - strand, within HSERO_RS02635 at 577.595 kb on + strand, within HSERO_RS02635 at 577.620 kb on - strand, within HSERO_RS02635 at 577.646 kb on - strand, within HSERO_RS02635 at 577.652 kb on + strand, within HSERO_RS02635 at 577.660 kb on - strand, within HSERO_RS02635 at 577.693 kb on - strand, within HSERO_RS02635 at 577.946 kb on + strand, within HSERO_RS02635 at 577.992 kb on + strand, within HSERO_RS02635 at 577.994 kb on + strand, within HSERO_RS02635 at 578.197 kb on - strand at 578.235 kb on + strand at 578.243 kb on - strand at 578.302 kb on + strand at 578.372 kb on + strand, within HSERO_RS02640 at 578.652 kb on + strand, within HSERO_RS02640 at 578.689 kb on + strand, within HSERO_RS02640 at 578.830 kb on + strand, within HSERO_RS02640 at 578.949 kb on + strand, within HSERO_RS02640 at 578.994 kb on + strand, within HSERO_RS02640 at 579.086 kb on + strand, within HSERO_RS02640 at 579.094 kb on - strand, within HSERO_RS02640 at 579.095 kb on + strand, within HSERO_RS02640 at 579.095 kb on + strand, within HSERO_RS02640 at 579.103 kb on - strand, within HSERO_RS02640 at 579.128 kb on + strand at 579.411 kb on + strand at 579.584 kb on + strand at 579.626 kb on - strand at 579.722 kb on + strand at 579.743 kb on + strand at 579.769 kb on + strand, within HSERO_RS02645 at 579.863 kb on - strand, within HSERO_RS02645 at 579.876 kb on + strand, within HSERO_RS02645 at 579.876 kb on + strand, within HSERO_RS02645 at 579.884 kb on - strand, within HSERO_RS02645 at 580.029 kb on - strand, within HSERO_RS02645 at 580.034 kb on + strand, within HSERO_RS02645 at 580.034 kb on + strand, within HSERO_RS02645 at 580.047 kb on - strand, within HSERO_RS02645 at 580.192 kb on + strand, within HSERO_RS02645
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t1 remove 577,278 + -0.1 577,363 + HSERO_RS02635 0.12 +0.3 577,464 - HSERO_RS02635 0.22 +1.1 577,595 + HSERO_RS02635 0.37 -0.8 577,620 - HSERO_RS02635 0.39 -1.6 577,646 - HSERO_RS02635 0.42 -0.5 577,652 + HSERO_RS02635 0.43 -0.8 577,660 - HSERO_RS02635 0.44 -0.2 577,693 - HSERO_RS02635 0.47 -0.8 577,946 + HSERO_RS02635 0.75 +0.2 577,992 + HSERO_RS02635 0.80 +0.0 577,994 + HSERO_RS02635 0.80 +1.1 578,197 - -0.1 578,235 + +0.4 578,243 - -1.8 578,302 + -0.7 578,372 + HSERO_RS02640 0.13 -1.0 578,652 + HSERO_RS02640 0.42 +0.1 578,689 + HSERO_RS02640 0.46 +0.6 578,830 + HSERO_RS02640 0.61 +0.2 578,949 + HSERO_RS02640 0.73 +0.4 578,994 + HSERO_RS02640 0.78 +0.6 579,086 + HSERO_RS02640 0.88 +0.5 579,094 - HSERO_RS02640 0.89 -1.8 579,095 + HSERO_RS02640 0.89 +0.5 579,095 + HSERO_RS02640 0.89 +0.4 579,103 - HSERO_RS02640 0.90 +0.0 579,128 + -1.0 579,411 + -0.7 579,584 + -0.9 579,626 - +0.3 579,722 + +0.0 579,743 + -0.3 579,769 + HSERO_RS02645 0.11 -0.9 579,863 - HSERO_RS02645 0.18 +0.2 579,876 + HSERO_RS02645 0.19 -1.4 579,876 + HSERO_RS02645 0.19 +0.7 579,884 - HSERO_RS02645 0.19 +0.8 580,029 - HSERO_RS02645 0.29 +0.0 580,034 + HSERO_RS02645 0.30 -0.4 580,034 + HSERO_RS02645 0.30 -2.8 580,047 - HSERO_RS02645 0.31 -0.2 580,192 + HSERO_RS02645 0.41 +1.6
Or see this region's nucleotide sequence