Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19315

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19305 and CSW01_19310 are separated by 300 nucleotidesCSW01_19310 and CSW01_19315 are separated by 138 nucleotidesCSW01_19315 and CSW01_19320 are separated by 100 nucleotides CSW01_19305: CSW01_19305 - M23 family peptidase, at 991,539 to 992,480 _19305 CSW01_19310: CSW01_19310 - hypothetical protein, at 992,781 to 992,924 _19310 CSW01_19315: CSW01_19315 - PTS mannitol transporter subunit IICBA, at 993,063 to 995,012 _19315 CSW01_19320: CSW01_19320 - mannitol-1-phosphate 5-dehydrogenase, at 995,113 to 996,267 _19320 Position (kb) 993 994 995 996Strain fitness (log2 ratio) -2 -1 0 1at 992.129 kb on + strand, within CSW01_19305at 992.270 kb on + strand, within CSW01_19305at 992.382 kb on - strand, within CSW01_19305at 992.577 kb on - strandat 992.579 kb on + strandat 992.586 kb on + strandat 992.586 kb on + strandat 992.586 kb on + strandat 992.586 kb on + strandat 992.592 kb on - strandat 992.594 kb on - strandat 992.594 kb on - strandat 992.609 kb on - strandat 992.611 kb on - strandat 992.682 kb on + strandat 993.218 kb on + strandat 993.305 kb on - strand, within CSW01_19315at 993.307 kb on - strand, within CSW01_19315at 993.376 kb on + strand, within CSW01_19315at 993.556 kb on + strand, within CSW01_19315at 993.585 kb on + strand, within CSW01_19315at 993.588 kb on + strand, within CSW01_19315at 993.727 kb on - strand, within CSW01_19315at 993.908 kb on + strand, within CSW01_19315at 993.912 kb on - strand, within CSW01_19315at 993.993 kb on + strand, within CSW01_19315at 994.001 kb on - strand, within CSW01_19315at 994.005 kb on + strand, within CSW01_19315at 994.007 kb on - strand, within CSW01_19315at 994.076 kb on + strand, within CSW01_19315at 994.076 kb on + strand, within CSW01_19315at 994.084 kb on - strand, within CSW01_19315at 994.157 kb on - strand, within CSW01_19315at 994.216 kb on + strand, within CSW01_19315at 994.246 kb on + strand, within CSW01_19315at 994.455 kb on - strand, within CSW01_19315at 994.494 kb on + strand, within CSW01_19315at 994.511 kb on + strand, within CSW01_19315at 994.562 kb on + strand, within CSW01_19315at 994.602 kb on + strand, within CSW01_19315at 994.688 kb on - strand, within CSW01_19315at 994.688 kb on - strand, within CSW01_19315at 994.688 kb on - strand, within CSW01_19315at 994.715 kb on + strand, within CSW01_19315at 994.720 kb on + strand, within CSW01_19315at 994.726 kb on + strand, within CSW01_19315at 994.726 kb on + strand, within CSW01_19315at 994.751 kb on + strand, within CSW01_19315at 994.756 kb on + strand, within CSW01_19315at 994.756 kb on + strand, within CSW01_19315at 994.972 kb on - strandat 995.036 kb on - strandat 995.057 kb on - strandat 995.140 kb on + strandat 995.172 kb on + strandat 995.276 kb on - strand, within CSW01_19320at 995.311 kb on + strand, within CSW01_19320at 995.321 kb on + strand, within CSW01_19320at 995.324 kb on - strand, within CSW01_19320at 995.329 kb on - strand, within CSW01_19320at 995.389 kb on - strand, within CSW01_19320at 995.402 kb on - strand, within CSW01_19320at 995.421 kb on + strand, within CSW01_19320at 995.429 kb on - strand, within CSW01_19320at 995.429 kb on - strand, within CSW01_19320at 995.454 kb on - strand, within CSW01_19320at 995.455 kb on - strand, within CSW01_19320at 995.474 kb on + strand, within CSW01_19320at 995.504 kb on + strand, within CSW01_19320at 995.504 kb on + strand, within CSW01_19320at 995.512 kb on - strand, within CSW01_19320at 995.595 kb on + strand, within CSW01_19320at 995.690 kb on - strand, within CSW01_19320at 995.690 kb on - strand, within CSW01_19320at 995.697 kb on - strand, within CSW01_19320at 995.703 kb on + strand, within CSW01_19320at 995.711 kb on - strand, within CSW01_19320at 995.764 kb on - strand, within CSW01_19320at 995.801 kb on + strand, within CSW01_19320at 995.809 kb on - strand, within CSW01_19320at 995.867 kb on - strand, within CSW01_19320at 995.867 kb on - strand, within CSW01_19320at 995.872 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.890 kb on + strand, within CSW01_19320at 995.898 kb on - strand, within CSW01_19320at 995.920 kb on + strand, within CSW01_19320at 995.920 kb on + strand, within CSW01_19320at 995.930 kb on + strand, within CSW01_19320

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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992,129 + CSW01_19305 0.63 -0.1
992,270 + CSW01_19305 0.78 +0.2
992,382 - CSW01_19305 0.89 +0.5
992,577 - +0.1
992,579 + +0.4
992,586 + +0.4
992,586 + +0.0
992,586 + -0.2
992,586 + +0.2
992,592 - +0.2
992,594 - -0.0
992,594 - -0.5
992,609 - -0.0
992,611 - -0.5
992,682 + +0.5
993,218 + +1.3
993,305 - CSW01_19315 0.12 -0.4
993,307 - CSW01_19315 0.13 +0.1
993,376 + CSW01_19315 0.16 +0.9
993,556 + CSW01_19315 0.25 +0.8
993,585 + CSW01_19315 0.27 +0.3
993,588 + CSW01_19315 0.27 +1.1
993,727 - CSW01_19315 0.34 -0.7
993,908 + CSW01_19315 0.43 -0.1
993,912 - CSW01_19315 0.44 -0.8
993,993 + CSW01_19315 0.48 -1.5
994,001 - CSW01_19315 0.48 +0.1
994,005 + CSW01_19315 0.48 +1.0
994,007 - CSW01_19315 0.48 +0.7
994,076 + CSW01_19315 0.52 +0.6
994,076 + CSW01_19315 0.52 +0.2
994,084 - CSW01_19315 0.52 +0.4
994,157 - CSW01_19315 0.56 -0.2
994,216 + CSW01_19315 0.59 +0.0
994,246 + CSW01_19315 0.61 +0.6
994,455 - CSW01_19315 0.71 +0.4
994,494 + CSW01_19315 0.73 +0.3
994,511 + CSW01_19315 0.74 -2.0
994,562 + CSW01_19315 0.77 +0.1
994,602 + CSW01_19315 0.79 -0.4
994,688 - CSW01_19315 0.83 +0.4
994,688 - CSW01_19315 0.83 +0.1
994,688 - CSW01_19315 0.83 -0.0
994,715 + CSW01_19315 0.85 +0.1
994,720 + CSW01_19315 0.85 +0.7
994,726 + CSW01_19315 0.85 +0.3
994,726 + CSW01_19315 0.85 +0.1
994,751 + CSW01_19315 0.87 -0.3
994,756 + CSW01_19315 0.87 +1.5
994,756 + CSW01_19315 0.87 -0.1
994,972 - -0.3
995,036 - -0.6
995,057 - +0.8
995,140 + +1.0
995,172 + +1.0
995,276 - CSW01_19320 0.14 -1.0
995,311 + CSW01_19320 0.17 -1.5
995,321 + CSW01_19320 0.18 -0.2
995,324 - CSW01_19320 0.18 -0.4
995,329 - CSW01_19320 0.19 -0.8
995,389 - CSW01_19320 0.24 -2.0
995,402 - CSW01_19320 0.25 -0.6
995,421 + CSW01_19320 0.27 -0.7
995,429 - CSW01_19320 0.27 +0.4
995,429 - CSW01_19320 0.27 +0.4
995,454 - CSW01_19320 0.30 -0.3
995,455 - CSW01_19320 0.30 -1.0
995,474 + CSW01_19320 0.31 -0.1
995,504 + CSW01_19320 0.34 +0.4
995,504 + CSW01_19320 0.34 +0.0
995,512 - CSW01_19320 0.35 -0.3
995,595 + CSW01_19320 0.42 -0.5
995,690 - CSW01_19320 0.50 -0.3
995,690 - CSW01_19320 0.50 -0.5
995,697 - CSW01_19320 0.51 -0.2
995,703 + CSW01_19320 0.51 -0.5
995,711 - CSW01_19320 0.52 +0.1
995,764 - CSW01_19320 0.56 -0.6
995,801 + CSW01_19320 0.60 +0.1
995,809 - CSW01_19320 0.60 -0.5
995,867 - CSW01_19320 0.65 +0.3
995,867 - CSW01_19320 0.65 -0.7
995,872 + CSW01_19320 0.66 -0.4
995,890 + CSW01_19320 0.67 -0.2
995,890 + CSW01_19320 0.67 -0.1
995,890 + CSW01_19320 0.67 -0.0
995,890 + CSW01_19320 0.67 +0.4
995,898 - CSW01_19320 0.68 +1.2
995,920 + CSW01_19320 0.70 -0.2
995,920 + CSW01_19320 0.70 +0.4
995,930 + CSW01_19320 0.71 -1.0

Or see this region's nucleotide sequence