Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19070

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19065 and CSW01_19070 are separated by 91 nucleotidesCSW01_19070 and CSW01_19075 are separated by 120 nucleotidesCSW01_19075 and CSW01_19080 are separated by 9 nucleotides CSW01_19065: CSW01_19065 - ATP-dependent helicase, at 942,193 to 943,479 _19065 CSW01_19070: CSW01_19070 - LysR family transcriptional regulator, at 943,571 to 944,497 _19070 CSW01_19075: CSW01_19075 - glutaredoxin 2, at 944,618 to 945,274 _19075 CSW01_19080: CSW01_19080 - alkene reductase, at 945,284 to 946,387 _19080 Position (kb) 943 944 945Strain fitness (log2 ratio) -2 -1 0 1 2at 942.613 kb on + strand, within CSW01_19065at 942.621 kb on - strand, within CSW01_19065at 942.841 kb on - strand, within CSW01_19065at 942.886 kb on + strand, within CSW01_19065at 942.992 kb on - strand, within CSW01_19065at 942.997 kb on + strand, within CSW01_19065at 943.005 kb on - strand, within CSW01_19065at 943.091 kb on + strand, within CSW01_19065at 943.099 kb on - strand, within CSW01_19065at 943.121 kb on - strand, within CSW01_19065at 943.121 kb on - strand, within CSW01_19065at 943.128 kb on + strand, within CSW01_19065at 943.139 kb on + strand, within CSW01_19065at 943.160 kb on + strand, within CSW01_19065at 943.197 kb on + strand, within CSW01_19065at 943.198 kb on + strand, within CSW01_19065at 943.206 kb on - strand, within CSW01_19065at 943.206 kb on - strand, within CSW01_19065at 943.212 kb on + strand, within CSW01_19065at 943.238 kb on + strand, within CSW01_19065at 943.256 kb on - strand, within CSW01_19065at 943.258 kb on - strand, within CSW01_19065at 943.374 kb on + strandat 943.403 kb on + strandat 943.422 kb on - strandat 943.424 kb on + strandat 943.463 kb on + strandat 943.471 kb on + strandat 943.500 kb on + strandat 943.603 kb on - strandat 943.603 kb on - strandat 943.664 kb on - strand, within CSW01_19070at 943.757 kb on + strand, within CSW01_19070at 943.790 kb on + strand, within CSW01_19070at 943.807 kb on - strand, within CSW01_19070at 943.871 kb on - strand, within CSW01_19070at 943.873 kb on + strand, within CSW01_19070at 943.932 kb on + strand, within CSW01_19070at 943.934 kb on + strand, within CSW01_19070at 943.950 kb on - strand, within CSW01_19070at 943.950 kb on - strand, within CSW01_19070at 943.951 kb on + strand, within CSW01_19070at 943.991 kb on - strand, within CSW01_19070at 943.998 kb on + strand, within CSW01_19070at 944.028 kb on - strand, within CSW01_19070at 944.119 kb on + strand, within CSW01_19070at 944.129 kb on + strand, within CSW01_19070at 944.137 kb on + strand, within CSW01_19070at 944.145 kb on - strand, within CSW01_19070at 944.230 kb on + strand, within CSW01_19070at 944.319 kb on - strand, within CSW01_19070at 944.397 kb on - strand, within CSW01_19070at 944.446 kb on - strandat 944.577 kb on + strandat 944.587 kb on + strandat 944.660 kb on - strandat 944.688 kb on - strand, within CSW01_19075at 944.706 kb on + strand, within CSW01_19075at 944.714 kb on - strand, within CSW01_19075at 944.846 kb on - strand, within CSW01_19075at 944.883 kb on - strand, within CSW01_19075at 944.936 kb on - strand, within CSW01_19075at 944.950 kb on + strand, within CSW01_19075at 945.005 kb on - strand, within CSW01_19075at 945.005 kb on - strand, within CSW01_19075at 945.053 kb on + strand, within CSW01_19075at 945.061 kb on - strand, within CSW01_19075at 945.063 kb on + strand, within CSW01_19075at 945.063 kb on + strand, within CSW01_19075at 945.096 kb on + strand, within CSW01_19075at 945.214 kb on - strandat 945.326 kb on + strandat 945.326 kb on + strandat 945.334 kb on - strandat 945.334 kb on - strandat 945.347 kb on + strandat 945.355 kb on - strandat 945.463 kb on - strand, within CSW01_19080at 945.478 kb on + strand, within CSW01_19080

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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942,613 + CSW01_19065 0.33 -0.2
942,621 - CSW01_19065 0.33 -0.4
942,841 - CSW01_19065 0.50 -0.1
942,886 + CSW01_19065 0.54 -0.4
942,992 - CSW01_19065 0.62 +0.4
942,997 + CSW01_19065 0.62 +0.5
943,005 - CSW01_19065 0.63 +0.4
943,091 + CSW01_19065 0.70 +0.5
943,099 - CSW01_19065 0.70 -0.0
943,121 - CSW01_19065 0.72 -0.4
943,121 - CSW01_19065 0.72 -1.3
943,128 + CSW01_19065 0.73 +1.1
943,139 + CSW01_19065 0.74 +0.7
943,160 + CSW01_19065 0.75 -0.8
943,197 + CSW01_19065 0.78 +0.7
943,198 + CSW01_19065 0.78 -0.5
943,206 - CSW01_19065 0.79 -1.5
943,206 - CSW01_19065 0.79 -0.7
943,212 + CSW01_19065 0.79 -0.6
943,238 + CSW01_19065 0.81 -1.0
943,256 - CSW01_19065 0.83 +0.3
943,258 - CSW01_19065 0.83 -0.3
943,374 + -0.2
943,403 + +0.1
943,422 - +0.7
943,424 + +0.1
943,463 + +0.3
943,471 + +0.1
943,500 + +0.1
943,603 - -0.6
943,603 - -0.6
943,664 - CSW01_19070 0.10 +1.9
943,757 + CSW01_19070 0.20 +1.5
943,790 + CSW01_19070 0.24 -0.1
943,807 - CSW01_19070 0.25 +0.5
943,871 - CSW01_19070 0.32 -0.1
943,873 + CSW01_19070 0.33 -0.5
943,932 + CSW01_19070 0.39 +0.3
943,934 + CSW01_19070 0.39 -0.3
943,950 - CSW01_19070 0.41 +0.1
943,950 - CSW01_19070 0.41 +1.2
943,951 + CSW01_19070 0.41 -0.7
943,991 - CSW01_19070 0.45 +0.1
943,998 + CSW01_19070 0.46 -0.5
944,028 - CSW01_19070 0.49 -0.0
944,119 + CSW01_19070 0.59 -0.1
944,129 + CSW01_19070 0.60 +0.2
944,137 + CSW01_19070 0.61 +0.0
944,145 - CSW01_19070 0.62 -0.4
944,230 + CSW01_19070 0.71 +0.8
944,319 - CSW01_19070 0.81 +1.0
944,397 - CSW01_19070 0.89 -0.7
944,446 - +0.3
944,577 + -0.4
944,587 + +0.1
944,660 - -0.6
944,688 - CSW01_19075 0.11 -1.7
944,706 + CSW01_19075 0.13 -0.7
944,714 - CSW01_19075 0.15 +0.3
944,846 - CSW01_19075 0.35 -0.4
944,883 - CSW01_19075 0.40 +0.3
944,936 - CSW01_19075 0.48 +0.3
944,950 + CSW01_19075 0.51 +0.0
945,005 - CSW01_19075 0.59 -1.8
945,005 - CSW01_19075 0.59 +0.3
945,053 + CSW01_19075 0.66 -0.5
945,061 - CSW01_19075 0.67 +0.0
945,063 + CSW01_19075 0.68 -0.5
945,063 + CSW01_19075 0.68 -0.1
945,096 + CSW01_19075 0.73 +1.1
945,214 - -0.3
945,326 + +0.8
945,326 + +0.5
945,334 - -0.1
945,334 - -0.1
945,347 + +0.6
945,355 - -0.5
945,463 - CSW01_19080 0.16 +0.2
945,478 + CSW01_19080 0.18 +0.5

Or see this region's nucleotide sequence