Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18570

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18565 and CSW01_18570 are separated by 2 nucleotidesCSW01_18570 and CSW01_18575 are separated by 189 nucleotidesCSW01_18575 and CSW01_18580 overlap by 20 nucleotides CSW01_18565: CSW01_18565 - L-threonine 3-dehydrogenase, at 836,078 to 837,109 _18565 CSW01_18570: CSW01_18570 - glycine C-acetyltransferase, at 837,112 to 838,305 _18570 CSW01_18575: CSW01_18575 - amidohydrolase, at 838,495 to 838,644 _18575 CSW01_18580: CSW01_18580 - protein deglycase HchA, at 838,625 to 839,484 _18580 Position (kb) 837 838 839Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 836.170 kb on + strandat 836.282 kb on + strand, within CSW01_18565at 836.308 kb on + strand, within CSW01_18565at 836.361 kb on + strand, within CSW01_18565at 836.409 kb on - strand, within CSW01_18565at 836.518 kb on + strand, within CSW01_18565at 836.584 kb on + strand, within CSW01_18565at 836.767 kb on + strand, within CSW01_18565at 836.767 kb on + strand, within CSW01_18565at 836.767 kb on + strand, within CSW01_18565at 836.788 kb on + strand, within CSW01_18565at 836.816 kb on + strand, within CSW01_18565at 836.933 kb on - strand, within CSW01_18565at 836.975 kb on + strand, within CSW01_18565at 837.037 kb on + strandat 837.040 kb on - strandat 837.081 kb on - strandat 837.171 kb on + strandat 837.260 kb on + strand, within CSW01_18570at 837.260 kb on + strand, within CSW01_18570at 837.260 kb on + strand, within CSW01_18570at 837.305 kb on - strand, within CSW01_18570at 837.434 kb on + strand, within CSW01_18570at 837.435 kb on + strand, within CSW01_18570at 837.565 kb on + strand, within CSW01_18570at 837.572 kb on + strand, within CSW01_18570at 837.572 kb on + strand, within CSW01_18570at 837.573 kb on - strand, within CSW01_18570at 837.573 kb on - strand, within CSW01_18570at 837.589 kb on + strand, within CSW01_18570at 837.652 kb on + strand, within CSW01_18570at 837.660 kb on - strand, within CSW01_18570at 837.660 kb on - strand, within CSW01_18570at 837.679 kb on + strand, within CSW01_18570at 837.749 kb on + strand, within CSW01_18570at 837.793 kb on + strand, within CSW01_18570at 837.830 kb on + strand, within CSW01_18570at 837.863 kb on + strand, within CSW01_18570at 837.863 kb on + strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.873 kb on + strand, within CSW01_18570at 837.873 kb on + strand, within CSW01_18570at 837.881 kb on - strand, within CSW01_18570at 837.919 kb on - strand, within CSW01_18570at 837.952 kb on - strand, within CSW01_18570at 838.043 kb on - strand, within CSW01_18570at 838.096 kb on + strand, within CSW01_18570at 838.105 kb on - strand, within CSW01_18570at 838.123 kb on - strand, within CSW01_18570at 838.128 kb on - strand, within CSW01_18570at 838.128 kb on - strand, within CSW01_18570at 838.128 kb on - strand, within CSW01_18570at 838.128 kb on - strand, within CSW01_18570at 838.138 kb on - strand, within CSW01_18570at 838.303 kb on - strandat 838.315 kb on - strandat 838.401 kb on + strandat 838.414 kb on + strandat 838.432 kb on - strandat 838.520 kb on + strand, within CSW01_18575at 838.603 kb on + strand, within CSW01_18575at 838.604 kb on + strand, within CSW01_18575at 838.612 kb on - strand, within CSW01_18575at 838.680 kb on - strandat 838.680 kb on - strandat 838.730 kb on + strand, within CSW01_18580at 838.749 kb on + strand, within CSW01_18580at 838.749 kb on + strand, within CSW01_18580at 838.757 kb on - strand, within CSW01_18580at 838.758 kb on - strand, within CSW01_18580at 838.758 kb on - strand, within CSW01_18580at 838.763 kb on - strand, within CSW01_18580at 839.061 kb on - strand, within CSW01_18580at 839.123 kb on + strand, within CSW01_18580at 839.130 kb on + strand, within CSW01_18580at 839.194 kb on + strand, within CSW01_18580at 839.216 kb on + strand, within CSW01_18580at 839.230 kb on - strand, within CSW01_18580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
remove
836,170 + -0.1
836,282 + CSW01_18565 0.20 +0.6
836,308 + CSW01_18565 0.22 -1.4
836,361 + CSW01_18565 0.27 -1.0
836,409 - CSW01_18565 0.32 +0.2
836,518 + CSW01_18565 0.43 -3.3
836,584 + CSW01_18565 0.49 +2.0
836,767 + CSW01_18565 0.67 -0.8
836,767 + CSW01_18565 0.67 -0.3
836,767 + CSW01_18565 0.67 -1.1
836,788 + CSW01_18565 0.69 +1.0
836,816 + CSW01_18565 0.72 +1.6
836,933 - CSW01_18565 0.83 -0.5
836,975 + CSW01_18565 0.87 +0.7
837,037 + +0.9
837,040 - -1.0
837,081 - -0.7
837,171 + -0.3
837,260 + CSW01_18570 0.12 +0.1
837,260 + CSW01_18570 0.12 +0.6
837,260 + CSW01_18570 0.12 +0.0
837,305 - CSW01_18570 0.16 +0.1
837,434 + CSW01_18570 0.27 -0.2
837,435 + CSW01_18570 0.27 -0.6
837,565 + CSW01_18570 0.38 +0.3
837,572 + CSW01_18570 0.39 +2.3
837,572 + CSW01_18570 0.39 -0.7
837,573 - CSW01_18570 0.39 +0.1
837,573 - CSW01_18570 0.39 +0.2
837,589 + CSW01_18570 0.40 -1.3
837,652 + CSW01_18570 0.45 -1.0
837,660 - CSW01_18570 0.46 +0.4
837,660 - CSW01_18570 0.46 -0.1
837,679 + CSW01_18570 0.47 -0.4
837,749 + CSW01_18570 0.53 -0.1
837,793 + CSW01_18570 0.57 +0.5
837,830 + CSW01_18570 0.60 +0.0
837,863 + CSW01_18570 0.63 -0.7
837,863 + CSW01_18570 0.63 -1.1
837,871 - CSW01_18570 0.64 -0.3
837,871 - CSW01_18570 0.64 -1.1
837,871 - CSW01_18570 0.64 -2.0
837,871 - CSW01_18570 0.64 -0.6
837,871 - CSW01_18570 0.64 -0.1
837,871 - CSW01_18570 0.64 -0.6
837,873 + CSW01_18570 0.64 +0.4
837,873 + CSW01_18570 0.64 -1.1
837,881 - CSW01_18570 0.64 +0.2
837,919 - CSW01_18570 0.68 +0.2
837,952 - CSW01_18570 0.70 -2.0
838,043 - CSW01_18570 0.78 -1.3
838,096 + CSW01_18570 0.82 -0.2
838,105 - CSW01_18570 0.83 -1.0
838,123 - CSW01_18570 0.85 +0.2
838,128 - CSW01_18570 0.85 +0.0
838,128 - CSW01_18570 0.85 -0.6
838,128 - CSW01_18570 0.85 -0.5
838,128 - CSW01_18570 0.85 +0.7
838,138 - CSW01_18570 0.86 -0.5
838,303 - -0.4
838,315 - +1.6
838,401 + -0.1
838,414 + -0.1
838,432 - +0.1
838,520 + CSW01_18575 0.17 +0.3
838,603 + CSW01_18575 0.72 -0.6
838,604 + CSW01_18575 0.73 +0.6
838,612 - CSW01_18575 0.78 +0.0
838,680 - +0.1
838,680 - -0.2
838,730 + CSW01_18580 0.12 -0.2
838,749 + CSW01_18580 0.14 +0.1
838,749 + CSW01_18580 0.14 +0.1
838,757 - CSW01_18580 0.15 -0.8
838,758 - CSW01_18580 0.15 +0.7
838,758 - CSW01_18580 0.15 -1.7
838,763 - CSW01_18580 0.16 +1.0
839,061 - CSW01_18580 0.51 +1.0
839,123 + CSW01_18580 0.58 -1.0
839,130 + CSW01_18580 0.59 +0.4
839,194 + CSW01_18580 0.66 -0.2
839,216 + CSW01_18580 0.69 +0.1
839,230 - CSW01_18580 0.70 +1.7

Or see this region's nucleotide sequence