Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18275

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18265 and CSW01_18270 overlap by 4 nucleotidesCSW01_18270 and CSW01_18275 are separated by 35 nucleotidesCSW01_18275 and CSW01_18280 are separated by 23 nucleotides CSW01_18265: CSW01_18265 - aspartate kinase, at 766,236 to 767,660 _18265 CSW01_18270: CSW01_18270 - L-ectoine synthase, at 767,657 to 768,073 _18270 CSW01_18275: CSW01_18275 - diaminobutyrate--2-oxoglutarate transaminase, at 768,109 to 769,374 _18275 CSW01_18280: CSW01_18280 - L-2,4-diaminobutyric acid acetyltransferase, at 769,398 to 769,919 _18280 Position (kb) 768 769 770Strain fitness (log2 ratio) -2 -1 0 1 2at 767.202 kb on + strand, within CSW01_18265at 767.229 kb on - strand, within CSW01_18265at 767.234 kb on - strand, within CSW01_18265at 767.234 kb on - strand, within CSW01_18265at 767.259 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.513 kb on + strand, within CSW01_18265at 767.573 kb on + strandat 767.573 kb on + strandat 767.603 kb on - strandat 767.647 kb on + strandat 767.655 kb on - strandat 767.655 kb on - strandat 767.655 kb on - strandat 767.689 kb on - strandat 767.694 kb on - strandat 767.704 kb on + strand, within CSW01_18270at 767.830 kb on - strand, within CSW01_18270at 767.843 kb on - strand, within CSW01_18270at 768.052 kb on + strandat 768.052 kb on + strandat 768.106 kb on - strandat 768.135 kb on + strandat 768.313 kb on + strand, within CSW01_18275at 768.377 kb on - strand, within CSW01_18275at 768.379 kb on - strand, within CSW01_18275at 768.383 kb on + strand, within CSW01_18275at 768.389 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.555 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.561 kb on - strand, within CSW01_18275at 768.568 kb on - strand, within CSW01_18275at 768.610 kb on - strand, within CSW01_18275at 768.663 kb on - strand, within CSW01_18275at 768.748 kb on + strand, within CSW01_18275at 768.771 kb on - strand, within CSW01_18275at 768.771 kb on - strand, within CSW01_18275at 768.778 kb on + strand, within CSW01_18275at 768.781 kb on - strand, within CSW01_18275at 768.867 kb on - strand, within CSW01_18275at 768.954 kb on + strand, within CSW01_18275at 768.990 kb on + strand, within CSW01_18275at 769.000 kb on + strand, within CSW01_18275at 769.021 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.092 kb on + strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.100 kb on - strand, within CSW01_18275at 769.211 kb on + strand, within CSW01_18275at 769.219 kb on - strand, within CSW01_18275at 769.219 kb on - strand, within CSW01_18275at 769.302 kb on - strandat 769.331 kb on + strandat 769.399 kb on - strandat 769.513 kb on - strand, within CSW01_18280at 769.518 kb on - strand, within CSW01_18280at 769.553 kb on + strand, within CSW01_18280at 769.561 kb on - strand, within CSW01_18280at 769.626 kb on + strand, within CSW01_18280at 769.626 kb on + strand, within CSW01_18280at 769.626 kb on + strand, within CSW01_18280at 769.633 kb on + strand, within CSW01_18280at 769.633 kb on + strand, within CSW01_18280at 769.634 kb on - strand, within CSW01_18280at 769.658 kb on - strand, within CSW01_18280at 769.876 kb on + strandat 769.876 kb on + strandat 769.894 kb on - strandat 770.191 kb on + strandat 770.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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767,202 + CSW01_18265 0.68 +1.0
767,229 - CSW01_18265 0.70 -0.2
767,234 - CSW01_18265 0.70 -0.4
767,234 - CSW01_18265 0.70 -0.8
767,259 + CSW01_18265 0.72 +0.6
767,426 + CSW01_18265 0.84 -0.6
767,426 + CSW01_18265 0.84 -1.3
767,426 + CSW01_18265 0.84 -2.2
767,426 + CSW01_18265 0.84 +0.9
767,426 + CSW01_18265 0.84 +0.7
767,426 + CSW01_18265 0.84 -0.8
767,426 + CSW01_18265 0.84 -0.0
767,426 + CSW01_18265 0.84 -0.1
767,434 - CSW01_18265 0.84 -1.2
767,434 - CSW01_18265 0.84 +0.2
767,434 - CSW01_18265 0.84 +0.1
767,434 - CSW01_18265 0.84 -0.5
767,434 - CSW01_18265 0.84 +0.1
767,434 - CSW01_18265 0.84 -0.3
767,434 - CSW01_18265 0.84 +0.5
767,434 - CSW01_18265 0.84 +0.2
767,434 - CSW01_18265 0.84 +0.5
767,434 - CSW01_18265 0.84 -0.7
767,513 + CSW01_18265 0.90 -0.1
767,573 + +1.3
767,573 + -0.4
767,603 - +0.0
767,647 + -0.3
767,655 - -0.3
767,655 - -0.1
767,655 - -0.2
767,689 - -0.3
767,694 - +0.5
767,704 + CSW01_18270 0.11 +0.4
767,830 - CSW01_18270 0.41 -0.6
767,843 - CSW01_18270 0.45 +0.1
768,052 + -0.4
768,052 + -0.7
768,106 - -0.2
768,135 + -1.0
768,313 + CSW01_18275 0.16 +0.4
768,377 - CSW01_18275 0.21 +0.9
768,379 - CSW01_18275 0.21 -0.1
768,383 + CSW01_18275 0.22 +0.3
768,389 + CSW01_18275 0.22 -2.1
768,542 + CSW01_18275 0.34 -0.6
768,542 + CSW01_18275 0.34 -0.7
768,542 + CSW01_18275 0.34 +1.2
768,542 + CSW01_18275 0.34 +0.6
768,542 + CSW01_18275 0.34 -1.2
768,542 + CSW01_18275 0.34 -0.0
768,542 + CSW01_18275 0.34 +0.3
768,542 + CSW01_18275 0.34 +0.4
768,542 + CSW01_18275 0.34 -0.1
768,542 + CSW01_18275 0.34 +0.7
768,550 - CSW01_18275 0.35 +1.0
768,550 - CSW01_18275 0.35 +0.2
768,550 - CSW01_18275 0.35 -0.3
768,550 - CSW01_18275 0.35 +1.0
768,550 - CSW01_18275 0.35 +0.5
768,550 - CSW01_18275 0.35 +1.6
768,550 - CSW01_18275 0.35 +0.3
768,550 - CSW01_18275 0.35 -0.4
768,550 - CSW01_18275 0.35 +0.4
768,550 - CSW01_18275 0.35 -0.1
768,555 - CSW01_18275 0.35 +0.3
768,560 - CSW01_18275 0.36 +1.1
768,560 - CSW01_18275 0.36 +0.4
768,561 - CSW01_18275 0.36 -0.0
768,568 - CSW01_18275 0.36 -0.4
768,610 - CSW01_18275 0.40 -0.3
768,663 - CSW01_18275 0.44 +1.3
768,748 + CSW01_18275 0.50 -0.1
768,771 - CSW01_18275 0.52 +0.1
768,771 - CSW01_18275 0.52 +0.4
768,778 + CSW01_18275 0.53 -0.7
768,781 - CSW01_18275 0.53 +0.3
768,867 - CSW01_18275 0.60 +0.7
768,954 + CSW01_18275 0.67 -0.2
768,990 + CSW01_18275 0.70 +0.7
769,000 + CSW01_18275 0.70 +1.2
769,021 + CSW01_18275 0.72 +0.2
769,092 + CSW01_18275 0.78 +0.1
769,092 + CSW01_18275 0.78 -0.6
769,092 + CSW01_18275 0.78 -0.4
769,092 + CSW01_18275 0.78 +0.5
769,092 + CSW01_18275 0.78 +0.2
769,092 + CSW01_18275 0.78 -0.7
769,100 - CSW01_18275 0.78 +0.1
769,100 - CSW01_18275 0.78 +2.3
769,100 - CSW01_18275 0.78 +0.3
769,100 - CSW01_18275 0.78 +0.0
769,100 - CSW01_18275 0.78 +0.5
769,211 + CSW01_18275 0.87 +0.1
769,219 - CSW01_18275 0.88 +0.1
769,219 - CSW01_18275 0.88 +0.1
769,302 - +1.4
769,331 + +0.4
769,399 - +0.2
769,513 - CSW01_18280 0.22 -0.2
769,518 - CSW01_18280 0.23 -1.8
769,553 + CSW01_18280 0.30 +0.2
769,561 - CSW01_18280 0.31 -0.4
769,626 + CSW01_18280 0.44 +2.3
769,626 + CSW01_18280 0.44 -0.7
769,626 + CSW01_18280 0.44 +0.2
769,633 + CSW01_18280 0.45 +0.0
769,633 + CSW01_18280 0.45 -1.2
769,634 - CSW01_18280 0.45 +0.5
769,658 - CSW01_18280 0.50 +0.5
769,876 + -0.1
769,876 + +0.4
769,894 - +0.1
770,191 + +0.0
770,312 - -0.3

Or see this region's nucleotide sequence