Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17850

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17835 and CSW01_17840 are separated by 40 nucleotidesCSW01_17840 and CSW01_17845 are separated by 37 nucleotidesCSW01_17845 and CSW01_17850 are separated by 198 nucleotidesCSW01_17850 and CSW01_17855 overlap by 9 nucleotides CSW01_17835: CSW01_17835 - hypothetical protein, at 676,586 to 676,984 _17835 CSW01_17840: CSW01_17840 - hypothetical protein, at 677,025 to 677,177 _17840 CSW01_17845: CSW01_17845 - hypothetical protein, at 677,215 to 677,754 _17845 CSW01_17850: CSW01_17850 - flagellar brake protein, at 677,953 to 678,663 _17850 CSW01_17855: CSW01_17855 - autoinducer 2 sensor kinase/phosphatase LuxQ, at 678,655 to 681,228 _17855 Position (kb) 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 676.998 kb on - strandat 677.117 kb on - strand, within CSW01_17840at 677.270 kb on + strand, within CSW01_17845at 677.270 kb on + strand, within CSW01_17845at 677.270 kb on + strand, within CSW01_17845at 677.278 kb on - strand, within CSW01_17845at 677.278 kb on - strand, within CSW01_17845at 677.285 kb on + strand, within CSW01_17845at 677.293 kb on - strand, within CSW01_17845at 677.293 kb on - strand, within CSW01_17845at 677.357 kb on + strand, within CSW01_17845at 677.503 kb on + strand, within CSW01_17845at 677.527 kb on + strand, within CSW01_17845at 677.572 kb on - strand, within CSW01_17845at 677.677 kb on - strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.687 kb on + strand, within CSW01_17845at 677.695 kb on - strand, within CSW01_17845at 677.748 kb on + strandat 677.748 kb on + strandat 677.805 kb on - strandat 677.810 kb on - strandat 677.832 kb on + strandat 677.840 kb on - strandat 677.941 kb on - strandat 677.953 kb on + strandat 677.953 kb on - strandat 677.961 kb on - strandat 678.080 kb on + strand, within CSW01_17850at 678.088 kb on - strand, within CSW01_17850at 678.166 kb on + strand, within CSW01_17850at 678.218 kb on + strand, within CSW01_17850at 678.273 kb on + strand, within CSW01_17850at 678.278 kb on + strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.286 kb on - strand, within CSW01_17850at 678.287 kb on - strand, within CSW01_17850at 678.468 kb on + strand, within CSW01_17850at 678.476 kb on + strand, within CSW01_17850at 678.786 kb on + strandat 678.793 kb on + strandat 678.794 kb on - strandat 678.816 kb on - strandat 678.935 kb on - strand, within CSW01_17855at 678.936 kb on + strand, within CSW01_17855at 678.944 kb on - strand, within CSW01_17855at 678.948 kb on + strand, within CSW01_17855at 678.958 kb on + strand, within CSW01_17855at 678.966 kb on - strand, within CSW01_17855at 679.094 kb on - strand, within CSW01_17855at 679.160 kb on + strand, within CSW01_17855at 679.168 kb on - strand, within CSW01_17855at 679.168 kb on - strand, within CSW01_17855at 679.186 kb on - strand, within CSW01_17855at 679.229 kb on + strand, within CSW01_17855at 679.239 kb on + strand, within CSW01_17855at 679.239 kb on + strand, within CSW01_17855at 679.247 kb on - strand, within CSW01_17855at 679.381 kb on + strand, within CSW01_17855at 679.467 kb on - strand, within CSW01_17855at 679.560 kb on - strand, within CSW01_17855at 679.597 kb on + strand, within CSW01_17855at 679.602 kb on + strand, within CSW01_17855at 679.602 kb on + strand, within CSW01_17855at 679.663 kb on + strand, within CSW01_17855

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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676,998 - -0.2
677,117 - CSW01_17840 0.60 +1.7
677,270 + CSW01_17845 0.10 +0.6
677,270 + CSW01_17845 0.10 +0.7
677,270 + CSW01_17845 0.10 -0.3
677,278 - CSW01_17845 0.12 +0.3
677,278 - CSW01_17845 0.12 +0.2
677,285 + CSW01_17845 0.13 -0.5
677,293 - CSW01_17845 0.14 +0.0
677,293 - CSW01_17845 0.14 +0.0
677,357 + CSW01_17845 0.26 +0.2
677,503 + CSW01_17845 0.53 -0.8
677,527 + CSW01_17845 0.58 -0.7
677,572 - CSW01_17845 0.66 -0.1
677,677 - CSW01_17845 0.86 -0.5
677,687 + CSW01_17845 0.87 +0.1
677,687 + CSW01_17845 0.87 -0.0
677,695 - CSW01_17845 0.89 -0.2
677,748 + +0.7
677,748 + -0.2
677,805 - +3.3
677,810 - +1.1
677,832 + +0.2
677,840 - -0.2
677,941 - -0.1
677,953 + -0.4
677,953 - +0.1
677,961 - +0.3
678,080 + CSW01_17850 0.18 +0.7
678,088 - CSW01_17850 0.19 -0.1
678,166 + CSW01_17850 0.30 -0.4
678,218 + CSW01_17850 0.37 +2.2
678,273 + CSW01_17850 0.45 +1.3
678,278 + CSW01_17850 0.46 +0.5
678,286 - CSW01_17850 0.47 +0.3
678,286 - CSW01_17850 0.47 -0.7
678,286 - CSW01_17850 0.47 +1.6
678,286 - CSW01_17850 0.47 +0.4
678,287 - CSW01_17850 0.47 -0.7
678,468 + CSW01_17850 0.72 +0.0
678,476 + CSW01_17850 0.74 -0.1
678,786 + -0.6
678,793 + -1.0
678,794 - -0.8
678,816 - -0.3
678,935 - CSW01_17855 0.11 -1.6
678,936 + CSW01_17855 0.11 -1.6
678,944 - CSW01_17855 0.11 +0.0
678,948 + CSW01_17855 0.11 +0.6
678,958 + CSW01_17855 0.12 -0.4
678,966 - CSW01_17855 0.12 -0.8
679,094 - CSW01_17855 0.17 -1.5
679,160 + CSW01_17855 0.20 -0.5
679,168 - CSW01_17855 0.20 -2.0
679,168 - CSW01_17855 0.20 -0.8
679,186 - CSW01_17855 0.21 -0.2
679,229 + CSW01_17855 0.22 -0.2
679,239 + CSW01_17855 0.23 -0.4
679,239 + CSW01_17855 0.23 -0.8
679,247 - CSW01_17855 0.23 -0.6
679,381 + CSW01_17855 0.28 +0.4
679,467 - CSW01_17855 0.32 -2.3
679,560 - CSW01_17855 0.35 -0.8
679,597 + CSW01_17855 0.37 -3.0
679,602 + CSW01_17855 0.37 -0.8
679,602 + CSW01_17855 0.37 +0.7
679,663 + CSW01_17855 0.39 +0.4

Or see this region's nucleotide sequence