Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17700

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17690 and CSW01_17695 are separated by 78 nucleotidesCSW01_17695 and CSW01_17700 overlap by 4 nucleotidesCSW01_17700 and CSW01_17705 overlap by 83 nucleotides CSW01_17690: CSW01_17690 - NADH-dependent alcohol dehydrogenase, at 640,838 to 641,986 _17690 CSW01_17695: CSW01_17695 - lysoplasmalogenase, at 642,065 to 642,754 _17695 CSW01_17700: CSW01_17700 - sigma-54-dependent Fis family transcriptional regulator, at 642,751 to 644,070 _17700 CSW01_17705: CSW01_17705 - two-component sensor histidine kinase, at 643,988 to 646,357 _17705 Position (kb) 642 643 644 645Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 641.893 kb on - strandat 641.990 kb on - strandat 642.261 kb on + strand, within CSW01_17695at 642.269 kb on - strand, within CSW01_17695at 642.305 kb on + strand, within CSW01_17695at 642.408 kb on + strand, within CSW01_17695at 642.427 kb on - strand, within CSW01_17695at 642.429 kb on + strand, within CSW01_17695at 642.500 kb on - strand, within CSW01_17695at 642.500 kb on - strand, within CSW01_17695at 642.564 kb on + strand, within CSW01_17695at 642.571 kb on + strand, within CSW01_17695at 642.571 kb on + strand, within CSW01_17695at 642.579 kb on - strand, within CSW01_17695at 642.584 kb on - strand, within CSW01_17695at 642.597 kb on - strand, within CSW01_17695at 642.613 kb on + strand, within CSW01_17695at 642.635 kb on - strand, within CSW01_17695at 642.719 kb on + strandat 642.728 kb on + strandat 642.833 kb on - strandat 642.833 kb on - strandat 642.919 kb on - strand, within CSW01_17700at 643.001 kb on + strand, within CSW01_17700at 643.009 kb on - strand, within CSW01_17700at 643.009 kb on - strand, within CSW01_17700at 643.070 kb on + strand, within CSW01_17700at 643.075 kb on + strand, within CSW01_17700at 643.092 kb on + strand, within CSW01_17700at 643.100 kb on - strand, within CSW01_17700at 643.100 kb on - strand, within CSW01_17700at 643.298 kb on + strand, within CSW01_17700at 643.306 kb on + strand, within CSW01_17700at 643.326 kb on - strand, within CSW01_17700at 643.349 kb on - strand, within CSW01_17700at 643.378 kb on + strand, within CSW01_17700at 643.386 kb on - strand, within CSW01_17700at 643.431 kb on + strand, within CSW01_17700at 643.431 kb on + strand, within CSW01_17700at 643.441 kb on + strand, within CSW01_17700at 643.449 kb on - strand, within CSW01_17700at 643.656 kb on + strand, within CSW01_17700at 643.729 kb on + strand, within CSW01_17700at 643.762 kb on + strand, within CSW01_17700at 643.770 kb on - strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.805 kb on + strand, within CSW01_17700at 643.839 kb on + strand, within CSW01_17700at 644.006 kb on - strandat 644.126 kb on + strandat 644.186 kb on + strandat 644.187 kb on - strandat 644.196 kb on + strandat 644.204 kb on - strandat 644.227 kb on + strand, within CSW01_17705at 644.230 kb on - strand, within CSW01_17705at 644.240 kb on - strand, within CSW01_17705at 644.253 kb on + strand, within CSW01_17705at 644.261 kb on - strand, within CSW01_17705at 644.270 kb on + strand, within CSW01_17705at 644.307 kb on + strand, within CSW01_17705at 644.307 kb on + strand, within CSW01_17705at 644.307 kb on + strand, within CSW01_17705at 644.315 kb on - strand, within CSW01_17705at 644.317 kb on + strand, within CSW01_17705at 644.325 kb on - strand, within CSW01_17705at 644.498 kb on - strand, within CSW01_17705at 644.561 kb on + strand, within CSW01_17705at 644.561 kb on + strand, within CSW01_17705at 644.730 kb on - strand, within CSW01_17705at 644.842 kb on + strand, within CSW01_17705

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
remove
641,893 - +0.3
641,990 - -1.9
642,261 + CSW01_17695 0.28 -0.1
642,269 - CSW01_17695 0.30 -0.3
642,305 + CSW01_17695 0.35 +0.2
642,408 + CSW01_17695 0.50 +0.2
642,427 - CSW01_17695 0.52 +0.6
642,429 + CSW01_17695 0.53 +0.5
642,500 - CSW01_17695 0.63 +0.3
642,500 - CSW01_17695 0.63 +0.9
642,564 + CSW01_17695 0.72 +0.3
642,571 + CSW01_17695 0.73 +0.1
642,571 + CSW01_17695 0.73 +0.0
642,579 - CSW01_17695 0.74 +3.6
642,584 - CSW01_17695 0.75 +0.8
642,597 - CSW01_17695 0.77 +0.3
642,613 + CSW01_17695 0.79 +0.8
642,635 - CSW01_17695 0.83 +0.2
642,719 + +0.2
642,728 + +0.0
642,833 - +0.3
642,833 - +0.3
642,919 - CSW01_17700 0.13 +0.4
643,001 + CSW01_17700 0.19 +0.6
643,009 - CSW01_17700 0.20 -0.8
643,009 - CSW01_17700 0.20 +0.6
643,070 + CSW01_17700 0.24 +0.8
643,075 + CSW01_17700 0.25 -1.3
643,092 + CSW01_17700 0.26 -0.3
643,100 - CSW01_17700 0.26 -0.6
643,100 - CSW01_17700 0.26 -0.3
643,298 + CSW01_17700 0.41 +0.3
643,306 + CSW01_17700 0.42 -1.0
643,326 - CSW01_17700 0.44 +0.3
643,349 - CSW01_17700 0.45 -0.6
643,378 + CSW01_17700 0.47 -1.0
643,386 - CSW01_17700 0.48 +0.2
643,431 + CSW01_17700 0.52 +0.4
643,431 + CSW01_17700 0.52 +0.2
643,441 + CSW01_17700 0.52 -0.3
643,449 - CSW01_17700 0.53 +0.0
643,656 + CSW01_17700 0.69 +1.2
643,729 + CSW01_17700 0.74 -0.8
643,762 + CSW01_17700 0.77 +0.4
643,770 - CSW01_17700 0.77 -0.1
643,805 + CSW01_17700 0.80 -2.9
643,805 + CSW01_17700 0.80 -0.2
643,805 + CSW01_17700 0.80 +0.0
643,805 + CSW01_17700 0.80 +0.0
643,839 + CSW01_17700 0.82 +0.1
644,006 - -0.1
644,126 + -0.4
644,186 + -0.2
644,187 - -0.6
644,196 + +0.3
644,204 - +1.1
644,227 + CSW01_17705 0.10 -1.6
644,230 - CSW01_17705 0.10 +0.2
644,240 - CSW01_17705 0.11 -0.5
644,253 + CSW01_17705 0.11 -0.3
644,261 - CSW01_17705 0.12 +1.3
644,270 + CSW01_17705 0.12 +0.0
644,307 + CSW01_17705 0.13 -0.2
644,307 + CSW01_17705 0.13 +0.0
644,307 + CSW01_17705 0.13 -0.4
644,315 - CSW01_17705 0.14 +0.0
644,317 + CSW01_17705 0.14 -1.6
644,325 - CSW01_17705 0.14 -0.7
644,498 - CSW01_17705 0.22 -0.5
644,561 + CSW01_17705 0.24 +0.7
644,561 + CSW01_17705 0.24 +1.5
644,730 - CSW01_17705 0.31 -0.4
644,842 + CSW01_17705 0.36 +0.6

Or see this region's nucleotide sequence