Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17485

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17480 and CSW01_17485 are separated by 75 nucleotidesCSW01_17485 and CSW01_17490 are separated by 121 nucleotides CSW01_17480: CSW01_17480 - LacI family transcriptional regulator, at 586,972 to 587,964 _17480 CSW01_17485: CSW01_17485 - sucrose-6-phosphate hydrolase, at 588,040 to 589,686 _17485 CSW01_17490: CSW01_17490 - aminoimidazole riboside kinase, at 589,808 to 590,779 _17490 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1 2at 587.087 kb on - strand, within CSW01_17480at 587.194 kb on + strand, within CSW01_17480at 587.194 kb on + strand, within CSW01_17480at 587.253 kb on + strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.261 kb on - strand, within CSW01_17480at 587.324 kb on + strand, within CSW01_17480at 587.324 kb on + strand, within CSW01_17480at 587.332 kb on - strand, within CSW01_17480at 587.389 kb on - strand, within CSW01_17480at 587.443 kb on - strand, within CSW01_17480at 587.473 kb on + strand, within CSW01_17480at 587.481 kb on - strand, within CSW01_17480at 587.481 kb on - strand, within CSW01_17480at 587.708 kb on + strand, within CSW01_17480at 587.716 kb on - strand, within CSW01_17480at 587.716 kb on - strand, within CSW01_17480at 587.732 kb on - strand, within CSW01_17480at 587.749 kb on - strand, within CSW01_17480at 587.902 kb on + strandat 588.035 kb on + strandat 588.093 kb on + strandat 588.103 kb on + strandat 588.213 kb on - strand, within CSW01_17485at 588.213 kb on - strand, within CSW01_17485at 588.213 kb on - strand, within CSW01_17485at 588.213 kb on - strand, within CSW01_17485at 588.215 kb on + strand, within CSW01_17485at 588.283 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.301 kb on + strand, within CSW01_17485at 588.306 kb on + strand, within CSW01_17485at 588.306 kb on + strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.309 kb on - strand, within CSW01_17485at 588.346 kb on - strand, within CSW01_17485at 588.348 kb on + strand, within CSW01_17485at 588.439 kb on + strand, within CSW01_17485at 588.500 kb on + strand, within CSW01_17485at 588.645 kb on + strand, within CSW01_17485at 588.698 kb on - strand, within CSW01_17485at 588.787 kb on + strand, within CSW01_17485at 588.795 kb on - strand, within CSW01_17485at 588.795 kb on - strand, within CSW01_17485at 588.810 kb on + strand, within CSW01_17485at 588.846 kb on + strand, within CSW01_17485at 588.854 kb on - strand, within CSW01_17485at 588.870 kb on - strand, within CSW01_17485at 588.890 kb on + strand, within CSW01_17485at 588.898 kb on - strand, within CSW01_17485at 588.898 kb on - strand, within CSW01_17485at 588.898 kb on - strand, within CSW01_17485at 588.943 kb on - strand, within CSW01_17485at 588.964 kb on + strand, within CSW01_17485at 588.993 kb on + strand, within CSW01_17485at 589.129 kb on - strand, within CSW01_17485at 589.149 kb on + strand, within CSW01_17485at 589.335 kb on + strand, within CSW01_17485at 589.335 kb on + strand, within CSW01_17485at 589.343 kb on + strand, within CSW01_17485at 589.487 kb on + strand, within CSW01_17485at 589.568 kb on + strandat 589.624 kb on + strandat 589.629 kb on + strandat 589.629 kb on + strandat 589.661 kb on + strandat 589.680 kb on + strandat 589.680 kb on + strandat 589.790 kb on - strandat 589.838 kb on + strandat 589.889 kb on + strandat 590.016 kb on + strand, within CSW01_17490at 590.109 kb on + strand, within CSW01_17490at 590.233 kb on + strand, within CSW01_17490at 590.241 kb on - strand, within CSW01_17490at 590.265 kb on - strand, within CSW01_17490at 590.288 kb on - strand, within CSW01_17490at 590.397 kb on - strand, within CSW01_17490at 590.452 kb on + strand, within CSW01_17490at 590.452 kb on + strand, within CSW01_17490at 590.460 kb on - strand, within CSW01_17490at 590.461 kb on + strand, within CSW01_17490at 590.497 kb on - strand, within CSW01_17490at 590.508 kb on - strand, within CSW01_17490

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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587,087 - CSW01_17480 0.12 +1.2
587,194 + CSW01_17480 0.22 -0.8
587,194 + CSW01_17480 0.22 -1.1
587,253 + CSW01_17480 0.28 +0.3
587,261 - CSW01_17480 0.29 -0.0
587,261 - CSW01_17480 0.29 +1.0
587,261 - CSW01_17480 0.29 +0.4
587,261 - CSW01_17480 0.29 +0.3
587,324 + CSW01_17480 0.35 -0.3
587,324 + CSW01_17480 0.35 +0.4
587,332 - CSW01_17480 0.36 -0.2
587,389 - CSW01_17480 0.42 +0.8
587,443 - CSW01_17480 0.47 +0.4
587,473 + CSW01_17480 0.50 +0.1
587,481 - CSW01_17480 0.51 -0.4
587,481 - CSW01_17480 0.51 -0.0
587,708 + CSW01_17480 0.74 -0.1
587,716 - CSW01_17480 0.75 -0.4
587,716 - CSW01_17480 0.75 -0.3
587,732 - CSW01_17480 0.77 +0.9
587,749 - CSW01_17480 0.78 -0.2
587,902 + +0.2
588,035 + -0.5
588,093 + -0.3
588,103 + -0.2
588,213 - CSW01_17485 0.11 +0.2
588,213 - CSW01_17485 0.11 +2.0
588,213 - CSW01_17485 0.11 +0.2
588,213 - CSW01_17485 0.11 +2.0
588,215 + CSW01_17485 0.11 +0.8
588,283 + CSW01_17485 0.15 +0.6
588,301 + CSW01_17485 0.16 +0.1
588,301 + CSW01_17485 0.16 +0.2
588,301 + CSW01_17485 0.16 -0.9
588,301 + CSW01_17485 0.16 +0.6
588,301 + CSW01_17485 0.16 -0.8
588,301 + CSW01_17485 0.16 +0.6
588,301 + CSW01_17485 0.16 +0.1
588,301 + CSW01_17485 0.16 -1.6
588,306 + CSW01_17485 0.16 +0.4
588,306 + CSW01_17485 0.16 -0.1
588,309 - CSW01_17485 0.16 -0.2
588,309 - CSW01_17485 0.16 +0.6
588,309 - CSW01_17485 0.16 +0.2
588,309 - CSW01_17485 0.16 +1.6
588,309 - CSW01_17485 0.16 +0.9
588,309 - CSW01_17485 0.16 -1.3
588,309 - CSW01_17485 0.16 +2.2
588,309 - CSW01_17485 0.16 +1.0
588,309 - CSW01_17485 0.16 -0.2
588,309 - CSW01_17485 0.16 +1.0
588,346 - CSW01_17485 0.19 +0.1
588,348 + CSW01_17485 0.19 -0.4
588,439 + CSW01_17485 0.24 -0.4
588,500 + CSW01_17485 0.28 -1.0
588,645 + CSW01_17485 0.37 -0.6
588,698 - CSW01_17485 0.40 -0.4
588,787 + CSW01_17485 0.45 +0.3
588,795 - CSW01_17485 0.46 +0.2
588,795 - CSW01_17485 0.46 +0.7
588,810 + CSW01_17485 0.47 +0.1
588,846 + CSW01_17485 0.49 +1.1
588,854 - CSW01_17485 0.49 +0.1
588,870 - CSW01_17485 0.50 -1.2
588,890 + CSW01_17485 0.52 +0.0
588,898 - CSW01_17485 0.52 -0.7
588,898 - CSW01_17485 0.52 +0.2
588,898 - CSW01_17485 0.52 +0.2
588,943 - CSW01_17485 0.55 +0.5
588,964 + CSW01_17485 0.56 +1.1
588,993 + CSW01_17485 0.58 -0.8
589,129 - CSW01_17485 0.66 +1.1
589,149 + CSW01_17485 0.67 -0.0
589,335 + CSW01_17485 0.79 +0.7
589,335 + CSW01_17485 0.79 -0.3
589,343 + CSW01_17485 0.79 +2.0
589,487 + CSW01_17485 0.88 +1.0
589,568 + +0.6
589,624 + +0.2
589,629 + -1.8
589,629 + +0.3
589,661 + +0.8
589,680 + -0.0
589,680 + -0.3
589,790 - -0.0
589,838 + -0.2
589,889 + +2.0
590,016 + CSW01_17490 0.21 +0.1
590,109 + CSW01_17490 0.31 -0.7
590,233 + CSW01_17490 0.44 -0.5
590,241 - CSW01_17490 0.45 +0.4
590,265 - CSW01_17490 0.47 +0.6
590,288 - CSW01_17490 0.49 -0.0
590,397 - CSW01_17490 0.61 -0.0
590,452 + CSW01_17490 0.66 +0.3
590,452 + CSW01_17490 0.66 -1.6
590,460 - CSW01_17490 0.67 -0.4
590,461 + CSW01_17490 0.67 +0.5
590,497 - CSW01_17490 0.71 +1.1
590,508 - CSW01_17490 0.72 -0.0

Or see this region's nucleotide sequence