Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16485

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16480 and CSW01_16485 are separated by 146 nucleotidesCSW01_16485 and CSW01_16490 are separated by 142 nucleotides CSW01_16480: CSW01_16480 - DUF2806 domain-containing protein, at 406,720 to 407,577 _16480 CSW01_16485: CSW01_16485 - hypothetical protein, at 407,724 to 408,284 _16485 CSW01_16490: CSW01_16490 - hypothetical protein, at 408,427 to 408,774 _16490 Position (kb) 407 408 409Strain fitness (log2 ratio) -2 -1 0 1 2at 406.788 kb on + strandat 406.818 kb on + strand, within CSW01_16480at 406.818 kb on + strand, within CSW01_16480at 406.859 kb on - strand, within CSW01_16480at 406.859 kb on - strand, within CSW01_16480at 406.891 kb on - strand, within CSW01_16480at 406.908 kb on - strand, within CSW01_16480at 407.024 kb on - strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.025 kb on + strand, within CSW01_16480at 407.033 kb on - strand, within CSW01_16480at 407.033 kb on - strand, within CSW01_16480at 407.035 kb on + strand, within CSW01_16480at 407.084 kb on + strand, within CSW01_16480at 407.159 kb on + strand, within CSW01_16480at 407.161 kb on + strand, within CSW01_16480at 407.177 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.217 kb on + strand, within CSW01_16480at 407.233 kb on - strand, within CSW01_16480at 407.314 kb on + strand, within CSW01_16480at 407.314 kb on + strand, within CSW01_16480at 407.374 kb on + strand, within CSW01_16480at 407.492 kb on + strandat 407.549 kb on + strandat 407.556 kb on - strandat 407.557 kb on - strandat 407.557 kb on - strandat 407.592 kb on - strandat 407.606 kb on - strandat 407.636 kb on + strandat 407.644 kb on - strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.649 kb on + strandat 407.657 kb on - strandat 407.679 kb on + strandat 407.679 kb on + strandat 407.689 kb on + strandat 407.689 kb on + strandat 407.697 kb on - strandat 407.702 kb on - strandat 407.702 kb on - strandat 407.702 kb on - strandat 407.712 kb on + strandat 407.720 kb on - strandat 407.757 kb on - strandat 407.767 kb on - strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.769 kb on + strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.777 kb on - strandat 407.812 kb on + strand, within CSW01_16485at 407.817 kb on + strand, within CSW01_16485at 407.822 kb on + strand, within CSW01_16485at 407.822 kb on + strand, within CSW01_16485at 407.825 kb on - strand, within CSW01_16485at 407.825 kb on - strand, within CSW01_16485at 407.827 kb on + strand, within CSW01_16485at 407.827 kb on + strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.830 kb on - strand, within CSW01_16485at 407.834 kb on + strand, within CSW01_16485at 407.836 kb on + strand, within CSW01_16485at 407.836 kb on - strand, within CSW01_16485at 407.837 kb on - strand, within CSW01_16485at 407.841 kb on + strand, within CSW01_16485at 407.841 kb on + strand, within CSW01_16485at 407.844 kb on - strand, within CSW01_16485at 407.848 kb on + strand, within CSW01_16485at 407.849 kb on - strand, within CSW01_16485at 407.856 kb on - strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.867 kb on + strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.875 kb on - strand, within CSW01_16485at 407.885 kb on - strand, within CSW01_16485at 407.982 kb on + strand, within CSW01_16485at 407.982 kb on + strand, within CSW01_16485at 407.990 kb on - strand, within CSW01_16485at 407.995 kb on - strand, within CSW01_16485at 408.015 kb on + strand, within CSW01_16485at 408.036 kb on - strand, within CSW01_16485at 408.044 kb on + strand, within CSW01_16485at 408.096 kb on + strand, within CSW01_16485at 408.133 kb on + strand, within CSW01_16485at 408.133 kb on + strand, within CSW01_16485at 408.255 kb on + strandat 408.255 kb on + strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.274 kb on + strandat 408.396 kb on - strandat 408.396 kb on - strandat 408.396 kb on - strandat 409.083 kb on - strandat 409.103 kb on - strandat 409.103 kb on - strandat 409.133 kb on - strandat 409.217 kb on + strandat 409.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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406,788 + -0.4
406,818 + CSW01_16480 0.11 +0.2
406,818 + CSW01_16480 0.11 +1.1
406,859 - CSW01_16480 0.16 -0.5
406,859 - CSW01_16480 0.16 +0.0
406,891 - CSW01_16480 0.20 +0.5
406,908 - CSW01_16480 0.22 +0.9
407,024 - CSW01_16480 0.35 -1.0
407,025 + CSW01_16480 0.36 +0.4
407,025 + CSW01_16480 0.36 -0.4
407,025 + CSW01_16480 0.36 +1.4
407,033 - CSW01_16480 0.36 +1.0
407,033 - CSW01_16480 0.36 -0.2
407,035 + CSW01_16480 0.37 -0.9
407,084 + CSW01_16480 0.42 +0.1
407,159 + CSW01_16480 0.51 -0.5
407,161 + CSW01_16480 0.51 +0.0
407,177 + CSW01_16480 0.53 +0.2
407,217 + CSW01_16480 0.58 +0.2
407,217 + CSW01_16480 0.58 +0.4
407,217 + CSW01_16480 0.58 -0.5
407,233 - CSW01_16480 0.60 -0.8
407,314 + CSW01_16480 0.69 +0.2
407,314 + CSW01_16480 0.69 -0.3
407,374 + CSW01_16480 0.76 +0.5
407,492 + -1.7
407,549 + +0.3
407,556 - +0.5
407,557 - -0.2
407,557 - +0.5
407,592 - +0.0
407,606 - +2.0
407,636 + +1.0
407,644 - -0.2
407,649 + -0.6
407,649 + +0.1
407,649 + +0.7
407,649 + -0.1
407,649 + -0.3
407,657 - +0.2
407,679 + -0.6
407,679 + +0.4
407,689 + -0.5
407,689 + +0.2
407,697 - +0.0
407,702 - +0.7
407,702 - +0.2
407,702 - +0.3
407,712 + -1.3
407,720 - -0.3
407,757 - +0.4
407,767 - +0.5
407,769 + +0.2
407,769 + -1.1
407,769 + +0.4
407,769 + +0.6
407,777 - +0.1
407,777 - -0.1
407,777 - -1.0
407,777 - -0.3
407,777 - +0.1
407,777 - +0.7
407,777 - -1.0
407,777 - +0.4
407,812 + CSW01_16485 0.16 -0.2
407,817 + CSW01_16485 0.17 -0.4
407,822 + CSW01_16485 0.17 +1.0
407,822 + CSW01_16485 0.17 -0.2
407,825 - CSW01_16485 0.18 -0.6
407,825 - CSW01_16485 0.18 -0.5
407,827 + CSW01_16485 0.18 -0.3
407,827 + CSW01_16485 0.18 +0.3
407,830 - CSW01_16485 0.19 +0.6
407,830 - CSW01_16485 0.19 +1.6
407,830 - CSW01_16485 0.19 +0.5
407,830 - CSW01_16485 0.19 -0.5
407,834 + CSW01_16485 0.20 -0.3
407,836 + CSW01_16485 0.20 -1.9
407,836 - CSW01_16485 0.20 -0.3
407,837 - CSW01_16485 0.20 -0.1
407,841 + CSW01_16485 0.21 -0.1
407,841 + CSW01_16485 0.21 +0.5
407,844 - CSW01_16485 0.21 -0.1
407,848 + CSW01_16485 0.22 -0.2
407,849 - CSW01_16485 0.22 -0.4
407,856 - CSW01_16485 0.24 -0.6
407,867 + CSW01_16485 0.25 -0.1
407,867 + CSW01_16485 0.25 +0.0
407,867 + CSW01_16485 0.25 +0.0
407,867 + CSW01_16485 0.25 +0.8
407,867 + CSW01_16485 0.25 -0.1
407,867 + CSW01_16485 0.25 -0.3
407,875 - CSW01_16485 0.27 -0.8
407,875 - CSW01_16485 0.27 -0.0
407,875 - CSW01_16485 0.27 -0.3
407,875 - CSW01_16485 0.27 +0.7
407,875 - CSW01_16485 0.27 +0.4
407,875 - CSW01_16485 0.27 +0.4
407,875 - CSW01_16485 0.27 +0.9
407,875 - CSW01_16485 0.27 -0.6
407,885 - CSW01_16485 0.29 -0.8
407,982 + CSW01_16485 0.46 +0.8
407,982 + CSW01_16485 0.46 +0.3
407,990 - CSW01_16485 0.47 +0.6
407,995 - CSW01_16485 0.48 +0.4
408,015 + CSW01_16485 0.52 +0.3
408,036 - CSW01_16485 0.56 +1.6
408,044 + CSW01_16485 0.57 +0.3
408,096 + CSW01_16485 0.66 +0.0
408,133 + CSW01_16485 0.73 -0.3
408,133 + CSW01_16485 0.73 +0.2
408,255 + +0.1
408,255 + -0.3
408,263 - +0.0
408,263 - -0.1
408,274 + +1.4
408,396 - +0.6
408,396 - +0.3
408,396 - -1.4
409,083 - +0.1
409,103 - +0.4
409,103 - -0.1
409,133 - +0.0
409,217 + -0.1
409,262 + -0.8

Or see this region's nucleotide sequence