Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15985

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15975 and CSW01_15980 are separated by 296 nucleotidesCSW01_15980 and CSW01_15985 are separated by 195 nucleotidesCSW01_15985 and CSW01_15990 are separated by 148 nucleotides CSW01_15975: CSW01_15975 - nitrate reductase, at 360,318 to 360,854 _15975 CSW01_15980: CSW01_15980 - DUF645 domain-containing protein, at 361,151 to 361,330 _15980 CSW01_15985: CSW01_15985 - GNAT family N-acetyltransferase, at 361,526 to 361,951 _15985 CSW01_15990: CSW01_15990 - hypothetical protein, at 362,100 to 362,447 _15990 Position (kb) 361 362Strain fitness (log2 ratio) -1 0 1at 360.844 kb on - strandat 362.109 kb on + strandat 362.203 kb on - strand, within CSW01_15990at 362.342 kb on + strand, within CSW01_15990at 362.462 kb on - strandat 362.462 kb on - strandat 362.474 kb on - strandat 362.672 kb on + strandat 362.742 kb on + strandat 362.748 kb on - strandat 362.750 kb on + strandat 362.793 kb on - strandat 362.862 kb on + strandat 362.862 kb on + strandat 362.870 kb on - strandat 362.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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360,844 - +1.2
362,109 + +1.1
362,203 - CSW01_15990 0.30 -0.2
362,342 + CSW01_15990 0.70 +0.2
362,462 - -0.3
362,462 - +0.4
362,474 - +1.0
362,672 + -0.1
362,742 + -0.2
362,748 - -1.6
362,750 + -1.3
362,793 - +0.2
362,862 + -0.5
362,862 + -1.5
362,870 - -0.7
362,906 - -0.8

Or see this region's nucleotide sequence