Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15290

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15285 and CSW01_15290 are separated by 282 nucleotidesCSW01_15290 and CSW01_15295 are separated by 15 nucleotides CSW01_15285: CSW01_15285 - MFS transporter, at 283,169 to 284,308 _15285 CSW01_15290: CSW01_15290 - methyl-accepting chemotaxis protein, at 284,591 to 286,522 _15290 CSW01_15295: CSW01_15295 - aspartate aminotransferase family protein, at 286,538 to 288,211 _15295 Position (kb) 284 285 286 287Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 283.595 kb on + strand, within CSW01_15285at 283.598 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.731 kb on - strand, within CSW01_15285at 283.771 kb on + strand, within CSW01_15285at 283.813 kb on - strand, within CSW01_15285at 283.883 kb on - strand, within CSW01_15285at 283.899 kb on + strand, within CSW01_15285at 283.915 kb on + strand, within CSW01_15285at 283.972 kb on - strand, within CSW01_15285at 283.981 kb on + strand, within CSW01_15285at 284.007 kb on - strand, within CSW01_15285at 284.105 kb on + strand, within CSW01_15285at 284.113 kb on - strand, within CSW01_15285at 284.115 kb on + strand, within CSW01_15285at 284.120 kb on - strand, within CSW01_15285at 284.125 kb on - strand, within CSW01_15285at 284.211 kb on + strandat 284.221 kb on + strandat 284.223 kb on + strandat 284.230 kb on - strandat 284.245 kb on - strandat 284.252 kb on + strandat 284.271 kb on + strandat 284.302 kb on + strandat 284.302 kb on + strandat 284.310 kb on - strandat 284.310 kb on - strandat 284.310 kb on - strandat 284.316 kb on - strandat 284.329 kb on - strandat 284.331 kb on + strandat 284.348 kb on + strandat 284.367 kb on + strandat 284.793 kb on + strand, within CSW01_15290at 284.830 kb on - strand, within CSW01_15290at 284.857 kb on + strand, within CSW01_15290at 284.865 kb on - strand, within CSW01_15290at 284.893 kb on + strand, within CSW01_15290at 284.903 kb on - strand, within CSW01_15290at 284.939 kb on - strand, within CSW01_15290at 284.997 kb on + strand, within CSW01_15290at 285.005 kb on - strand, within CSW01_15290at 285.133 kb on + strand, within CSW01_15290at 285.133 kb on + strand, within CSW01_15290at 285.260 kb on + strand, within CSW01_15290at 285.268 kb on - strand, within CSW01_15290at 285.369 kb on - strand, within CSW01_15290at 285.391 kb on + strand, within CSW01_15290at 285.398 kb on + strand, within CSW01_15290at 285.399 kb on + strand, within CSW01_15290at 285.437 kb on + strand, within CSW01_15290at 285.474 kb on + strand, within CSW01_15290at 285.495 kb on + strand, within CSW01_15290at 285.495 kb on + strand, within CSW01_15290at 285.572 kb on + strand, within CSW01_15290at 285.577 kb on + strand, within CSW01_15290at 285.580 kb on - strand, within CSW01_15290at 285.585 kb on - strand, within CSW01_15290at 285.587 kb on + strand, within CSW01_15290at 285.629 kb on + strand, within CSW01_15290at 285.644 kb on + strand, within CSW01_15290at 285.693 kb on - strand, within CSW01_15290at 285.718 kb on - strand, within CSW01_15290at 285.720 kb on + strand, within CSW01_15290at 285.720 kb on + strand, within CSW01_15290at 285.728 kb on - strand, within CSW01_15290at 285.829 kb on + strand, within CSW01_15290at 285.834 kb on + strand, within CSW01_15290at 286.058 kb on + strand, within CSW01_15290at 286.091 kb on + strand, within CSW01_15290at 286.138 kb on - strand, within CSW01_15290at 286.156 kb on + strand, within CSW01_15290at 286.156 kb on + strand, within CSW01_15290at 286.203 kb on + strand, within CSW01_15290at 286.210 kb on - strand, within CSW01_15290at 286.221 kb on + strand, within CSW01_15290at 286.229 kb on - strand, within CSW01_15290at 286.233 kb on + strand, within CSW01_15290at 286.233 kb on + strand, within CSW01_15290at 286.254 kb on - strand, within CSW01_15290at 286.269 kb on + strand, within CSW01_15290at 286.269 kb on + strand, within CSW01_15290at 286.277 kb on + strand, within CSW01_15290at 286.277 kb on + strand, within CSW01_15290at 286.285 kb on - strand, within CSW01_15290at 286.287 kb on + strand, within CSW01_15290at 286.295 kb on - strand, within CSW01_15290at 286.302 kb on + strand, within CSW01_15290at 286.310 kb on - strand, within CSW01_15290at 286.310 kb on - strand, within CSW01_15290at 286.317 kb on + strand, within CSW01_15290at 286.355 kb on + strandat 286.374 kb on + strandat 286.374 kb on + strandat 286.379 kb on + strandat 286.381 kb on + strandat 286.405 kb on - strandat 286.415 kb on + strandat 286.430 kb on - strandat 286.434 kb on + strandat 286.506 kb on + strandat 286.524 kb on - strandat 286.529 kb on - strandat 286.550 kb on - strandat 286.563 kb on + strandat 286.571 kb on - strandat 286.575 kb on + strandat 286.583 kb on - strandat 286.606 kb on + strandat 286.668 kb on - strandat 286.700 kb on + strandat 286.884 kb on - strand, within CSW01_15295at 286.896 kb on + strand, within CSW01_15295at 286.904 kb on - strand, within CSW01_15295at 286.904 kb on - strand, within CSW01_15295at 287.007 kb on + strand, within CSW01_15295at 287.015 kb on - strand, within CSW01_15295at 287.073 kb on + strand, within CSW01_15295at 287.083 kb on + strand, within CSW01_15295at 287.090 kb on + strand, within CSW01_15295at 287.091 kb on - strand, within CSW01_15295at 287.091 kb on - strand, within CSW01_15295at 287.098 kb on - strand, within CSW01_15295at 287.156 kb on + strand, within CSW01_15295at 287.218 kb on - strand, within CSW01_15295at 287.283 kb on + strand, within CSW01_15295at 287.283 kb on + strand, within CSW01_15295at 287.291 kb on - strand, within CSW01_15295at 287.308 kb on - strand, within CSW01_15295at 287.322 kb on + strand, within CSW01_15295at 287.330 kb on - strand, within CSW01_15295at 287.333 kb on + strand, within CSW01_15295at 287.333 kb on + strand, within CSW01_15295at 287.333 kb on + strand, within CSW01_15295at 287.355 kb on + strand, within CSW01_15295at 287.364 kb on - strand, within CSW01_15295at 287.374 kb on - strand, within CSW01_15295at 287.374 kb on - strand, within CSW01_15295at 287.425 kb on - strand, within CSW01_15295

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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283,595 + CSW01_15285 0.37 +0.7
283,598 - CSW01_15285 0.38 +1.6
283,603 - CSW01_15285 0.38 +0.1
283,603 - CSW01_15285 0.38 -0.4
283,603 - CSW01_15285 0.38 -1.5
283,731 - CSW01_15285 0.49 +0.5
283,771 + CSW01_15285 0.53 +1.3
283,813 - CSW01_15285 0.56 +0.0
283,883 - CSW01_15285 0.63 +0.4
283,899 + CSW01_15285 0.64 +1.5
283,915 + CSW01_15285 0.65 +0.9
283,972 - CSW01_15285 0.70 +0.3
283,981 + CSW01_15285 0.71 -0.4
284,007 - CSW01_15285 0.74 +0.5
284,105 + CSW01_15285 0.82 -0.3
284,113 - CSW01_15285 0.83 -0.2
284,115 + CSW01_15285 0.83 -0.0
284,120 - CSW01_15285 0.83 +0.7
284,125 - CSW01_15285 0.84 +0.1
284,211 + +0.5
284,221 + -2.9
284,223 + +0.3
284,230 - -0.1
284,245 - -0.1
284,252 + +0.1
284,271 + +0.1
284,302 + -1.5
284,302 + +0.5
284,310 - -0.3
284,310 - +0.4
284,310 - -0.1
284,316 - +1.0
284,329 - +0.6
284,331 + +0.8
284,348 + -0.4
284,367 + +0.4
284,793 + CSW01_15290 0.10 +0.3
284,830 - CSW01_15290 0.12 +0.1
284,857 + CSW01_15290 0.14 +1.1
284,865 - CSW01_15290 0.14 +0.5
284,893 + CSW01_15290 0.16 +0.2
284,903 - CSW01_15290 0.16 +0.5
284,939 - CSW01_15290 0.18 +0.5
284,997 + CSW01_15290 0.21 +0.1
285,005 - CSW01_15290 0.21 -0.9
285,133 + CSW01_15290 0.28 -0.3
285,133 + CSW01_15290 0.28 -0.3
285,260 + CSW01_15290 0.35 +0.1
285,268 - CSW01_15290 0.35 -0.8
285,369 - CSW01_15290 0.40 +0.7
285,391 + CSW01_15290 0.41 +0.7
285,398 + CSW01_15290 0.42 +0.7
285,399 + CSW01_15290 0.42 +0.1
285,437 + CSW01_15290 0.44 +0.6
285,474 + CSW01_15290 0.46 +0.8
285,495 + CSW01_15290 0.47 +0.2
285,495 + CSW01_15290 0.47 +0.2
285,572 + CSW01_15290 0.51 -0.2
285,577 + CSW01_15290 0.51 +0.0
285,580 - CSW01_15290 0.51 +0.6
285,585 - CSW01_15290 0.51 -0.4
285,587 + CSW01_15290 0.52 +0.1
285,629 + CSW01_15290 0.54 -0.0
285,644 + CSW01_15290 0.55 -0.2
285,693 - CSW01_15290 0.57 +0.3
285,718 - CSW01_15290 0.58 -2.5
285,720 + CSW01_15290 0.58 +0.2
285,720 + CSW01_15290 0.58 +1.7
285,728 - CSW01_15290 0.59 -1.1
285,829 + CSW01_15290 0.64 +0.1
285,834 + CSW01_15290 0.64 +0.4
286,058 + CSW01_15290 0.76 -0.5
286,091 + CSW01_15290 0.78 +0.4
286,138 - CSW01_15290 0.80 -0.2
286,156 + CSW01_15290 0.81 +0.2
286,156 + CSW01_15290 0.81 +0.2
286,203 + CSW01_15290 0.83 +0.5
286,210 - CSW01_15290 0.84 -0.1
286,221 + CSW01_15290 0.84 +0.8
286,229 - CSW01_15290 0.85 +0.9
286,233 + CSW01_15290 0.85 -0.3
286,233 + CSW01_15290 0.85 +0.8
286,254 - CSW01_15290 0.86 -1.6
286,269 + CSW01_15290 0.87 +0.4
286,269 + CSW01_15290 0.87 -0.4
286,277 + CSW01_15290 0.87 -0.4
286,277 + CSW01_15290 0.87 +0.7
286,285 - CSW01_15290 0.88 -0.2
286,287 + CSW01_15290 0.88 +0.4
286,295 - CSW01_15290 0.88 +0.2
286,302 + CSW01_15290 0.89 +0.2
286,310 - CSW01_15290 0.89 +0.2
286,310 - CSW01_15290 0.89 +1.1
286,317 + CSW01_15290 0.89 -0.3
286,355 + +0.1
286,374 + +1.1
286,374 + +0.7
286,379 + +0.1
286,381 + -0.5
286,405 - +0.1
286,415 + -0.0
286,430 - +0.0
286,434 + -0.3
286,506 + -0.6
286,524 - +0.2
286,529 - +0.9
286,550 - -0.7
286,563 + -0.3
286,571 - -0.3
286,575 + -0.6
286,583 - -0.2
286,606 + +0.4
286,668 - +0.4
286,700 + +1.9
286,884 - CSW01_15295 0.21 -0.3
286,896 + CSW01_15295 0.21 -0.3
286,904 - CSW01_15295 0.22 +1.2
286,904 - CSW01_15295 0.22 +0.3
287,007 + CSW01_15295 0.28 -0.6
287,015 - CSW01_15295 0.28 -1.4
287,073 + CSW01_15295 0.32 +1.8
287,083 + CSW01_15295 0.33 +0.6
287,090 + CSW01_15295 0.33 +1.3
287,091 - CSW01_15295 0.33 -0.5
287,091 - CSW01_15295 0.33 +0.0
287,098 - CSW01_15295 0.33 -1.0
287,156 + CSW01_15295 0.37 -0.4
287,218 - CSW01_15295 0.41 +0.7
287,283 + CSW01_15295 0.45 +0.0
287,283 + CSW01_15295 0.45 -1.1
287,291 - CSW01_15295 0.45 -0.6
287,308 - CSW01_15295 0.46 +0.9
287,322 + CSW01_15295 0.47 +1.9
287,330 - CSW01_15295 0.47 -1.4
287,333 + CSW01_15295 0.47 -0.2
287,333 + CSW01_15295 0.47 -0.8
287,333 + CSW01_15295 0.47 -1.7
287,355 + CSW01_15295 0.49 -2.3
287,364 - CSW01_15295 0.49 +0.1
287,374 - CSW01_15295 0.50 -0.6
287,374 - CSW01_15295 0.50 +0.3
287,425 - CSW01_15295 0.53 -0.0

Or see this region's nucleotide sequence