Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15285

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_15275 and CSW01_15280 are separated by 59 nucleotidesCSW01_15280 and CSW01_15285 are separated by 101 nucleotidesCSW01_15285 and CSW01_15290 are separated by 282 nucleotides CSW01_15275: CSW01_15275 - hypothetical protein, at 281,854 to 282,234 _15275 CSW01_15280: CSW01_15280 - AraC family transcriptional regulator, at 282,294 to 283,067 _15280 CSW01_15285: CSW01_15285 - MFS transporter, at 283,169 to 284,308 _15285 CSW01_15290: CSW01_15290 - methyl-accepting chemotaxis protein, at 284,591 to 286,522 _15290 Position (kb) 283 284 285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.523 kb on + strand, within CSW01_15280at 282.537 kb on - strand, within CSW01_15280at 282.644 kb on - strand, within CSW01_15280at 282.654 kb on - strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.697 kb on + strand, within CSW01_15280at 282.700 kb on - strand, within CSW01_15280at 282.700 kb on - strand, within CSW01_15280at 282.712 kb on - strand, within CSW01_15280at 282.712 kb on - strand, within CSW01_15280at 282.773 kb on + strand, within CSW01_15280at 282.783 kb on + strand, within CSW01_15280at 282.791 kb on - strand, within CSW01_15280at 282.805 kb on - strand, within CSW01_15280at 282.839 kb on - strand, within CSW01_15280at 282.839 kb on - strand, within CSW01_15280at 282.895 kb on - strand, within CSW01_15280at 282.906 kb on + strand, within CSW01_15280at 282.914 kb on - strand, within CSW01_15280at 282.971 kb on + strand, within CSW01_15280at 283.027 kb on - strandat 283.047 kb on - strandat 283.055 kb on - strandat 283.111 kb on + strandat 283.116 kb on + strandat 283.125 kb on + strandat 283.125 kb on + strandat 283.125 kb on + strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.155 kb on + strandat 283.179 kb on + strandat 283.255 kb on - strandat 283.281 kb on + strandat 283.303 kb on - strand, within CSW01_15285at 283.385 kb on + strand, within CSW01_15285at 283.451 kb on + strand, within CSW01_15285at 283.497 kb on + strand, within CSW01_15285at 283.531 kb on + strand, within CSW01_15285at 283.539 kb on - strand, within CSW01_15285at 283.547 kb on - strand, within CSW01_15285at 283.585 kb on + strand, within CSW01_15285at 283.595 kb on + strand, within CSW01_15285at 283.598 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.603 kb on - strand, within CSW01_15285at 283.731 kb on - strand, within CSW01_15285at 283.771 kb on + strand, within CSW01_15285at 283.813 kb on - strand, within CSW01_15285at 283.883 kb on - strand, within CSW01_15285at 283.899 kb on + strand, within CSW01_15285at 283.915 kb on + strand, within CSW01_15285at 283.972 kb on - strand, within CSW01_15285at 283.981 kb on + strand, within CSW01_15285at 284.007 kb on - strand, within CSW01_15285at 284.105 kb on + strand, within CSW01_15285at 284.113 kb on - strand, within CSW01_15285at 284.115 kb on + strand, within CSW01_15285at 284.120 kb on - strand, within CSW01_15285at 284.125 kb on - strand, within CSW01_15285at 284.211 kb on + strandat 284.221 kb on + strandat 284.223 kb on + strandat 284.230 kb on - strandat 284.245 kb on - strandat 284.252 kb on + strandat 284.271 kb on + strandat 284.302 kb on + strandat 284.302 kb on + strandat 284.310 kb on - strandat 284.310 kb on - strandat 284.310 kb on - strandat 284.316 kb on - strandat 284.329 kb on - strandat 284.331 kb on + strandat 284.348 kb on + strandat 284.367 kb on + strandat 284.793 kb on + strand, within CSW01_15290at 284.830 kb on - strand, within CSW01_15290at 284.857 kb on + strand, within CSW01_15290at 284.865 kb on - strand, within CSW01_15290at 284.893 kb on + strand, within CSW01_15290at 284.903 kb on - strand, within CSW01_15290at 284.939 kb on - strand, within CSW01_15290at 284.997 kb on + strand, within CSW01_15290at 285.005 kb on - strand, within CSW01_15290at 285.133 kb on + strand, within CSW01_15290at 285.133 kb on + strand, within CSW01_15290at 285.260 kb on + strand, within CSW01_15290at 285.268 kb on - strand, within CSW01_15290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
remove
282,315 + +0.5
282,315 + +1.0
282,315 + +1.4
282,315 + +0.4
282,315 + -0.4
282,315 + -0.9
282,315 + -0.6
282,315 + -0.1
282,323 - -0.0
282,323 - -0.1
282,323 - +0.5
282,323 - +0.1
282,323 - +0.1
282,523 + CSW01_15280 0.30 +0.1
282,537 - CSW01_15280 0.31 +0.6
282,644 - CSW01_15280 0.45 -0.7
282,654 - CSW01_15280 0.47 +0.2
282,692 + CSW01_15280 0.51 +0.5
282,692 + CSW01_15280 0.51 -0.5
282,692 + CSW01_15280 0.51 -1.5
282,697 + CSW01_15280 0.52 -0.1
282,700 - CSW01_15280 0.52 +1.4
282,700 - CSW01_15280 0.52 -0.1
282,712 - CSW01_15280 0.54 +0.8
282,712 - CSW01_15280 0.54 +1.8
282,773 + CSW01_15280 0.62 +0.1
282,783 + CSW01_15280 0.63 -0.1
282,791 - CSW01_15280 0.64 -0.1
282,805 - CSW01_15280 0.66 -0.1
282,839 - CSW01_15280 0.70 +0.5
282,839 - CSW01_15280 0.70 -1.4
282,895 - CSW01_15280 0.78 +0.5
282,906 + CSW01_15280 0.79 -1.1
282,914 - CSW01_15280 0.80 +0.6
282,971 + CSW01_15280 0.87 +0.5
283,027 - -0.7
283,047 - +1.0
283,055 - +0.5
283,111 + +0.1
283,116 + +0.2
283,125 + -0.1
283,125 + +0.4
283,125 + -0.3
283,133 - -0.0
283,133 - +1.9
283,133 - -0.1
283,133 - +0.5
283,155 + -0.2
283,179 + -0.3
283,255 - +0.1
283,281 + -0.4
283,303 - CSW01_15285 0.12 +0.1
283,385 + CSW01_15285 0.19 -0.5
283,451 + CSW01_15285 0.25 -0.1
283,497 + CSW01_15285 0.29 +0.1
283,531 + CSW01_15285 0.32 +0.4
283,539 - CSW01_15285 0.32 -0.7
283,547 - CSW01_15285 0.33 -0.4
283,585 + CSW01_15285 0.36 -0.3
283,595 + CSW01_15285 0.37 +0.7
283,598 - CSW01_15285 0.38 +1.6
283,603 - CSW01_15285 0.38 +0.1
283,603 - CSW01_15285 0.38 -0.4
283,603 - CSW01_15285 0.38 -1.5
283,731 - CSW01_15285 0.49 +0.5
283,771 + CSW01_15285 0.53 +1.3
283,813 - CSW01_15285 0.56 +0.0
283,883 - CSW01_15285 0.63 +0.4
283,899 + CSW01_15285 0.64 +1.5
283,915 + CSW01_15285 0.65 +0.9
283,972 - CSW01_15285 0.70 +0.3
283,981 + CSW01_15285 0.71 -0.4
284,007 - CSW01_15285 0.74 +0.5
284,105 + CSW01_15285 0.82 -0.3
284,113 - CSW01_15285 0.83 -0.2
284,115 + CSW01_15285 0.83 -0.0
284,120 - CSW01_15285 0.83 +0.7
284,125 - CSW01_15285 0.84 +0.1
284,211 + +0.5
284,221 + -2.9
284,223 + +0.3
284,230 - -0.1
284,245 - -0.1
284,252 + +0.1
284,271 + +0.1
284,302 + -1.5
284,302 + +0.5
284,310 - -0.3
284,310 - +0.4
284,310 - -0.1
284,316 - +1.0
284,329 - +0.6
284,331 + +0.8
284,348 + -0.4
284,367 + +0.4
284,793 + CSW01_15290 0.10 +0.3
284,830 - CSW01_15290 0.12 +0.1
284,857 + CSW01_15290 0.14 +1.1
284,865 - CSW01_15290 0.14 +0.5
284,893 + CSW01_15290 0.16 +0.2
284,903 - CSW01_15290 0.16 +0.5
284,939 - CSW01_15290 0.18 +0.5
284,997 + CSW01_15290 0.21 +0.1
285,005 - CSW01_15290 0.21 -0.9
285,133 + CSW01_15290 0.28 -0.3
285,133 + CSW01_15290 0.28 -0.3
285,260 + CSW01_15290 0.35 +0.1
285,268 - CSW01_15290 0.35 -0.8

Or see this region's nucleotide sequence