Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14420 and CSW01_14425 are separated by 117 nucleotides CSW01_14425 and CSW01_14430 are separated by 222 nucleotides
CSW01_14420: CSW01_14420 - peptidase M23, at 89,147 to 90,439
_14420
CSW01_14425: CSW01_14425 - GGDEF domain-containing protein, at 90,557 to 92,380
_14425
CSW01_14430: CSW01_14430 - LysR family transcriptional regulator, at 92,603 to 93,490
_14430
Position (kb) 90
91
92
93 Strain fitness (log2 ratio) -2
-1
0
1
2 at 89.576 kb on + strand, within CSW01_14420 at 89.584 kb on - strand, within CSW01_14420 at 89.908 kb on + strand, within CSW01_14420 at 90.010 kb on - strand, within CSW01_14420 at 90.071 kb on + strand, within CSW01_14420 at 90.071 kb on + strand, within CSW01_14420 at 90.071 kb on + strand, within CSW01_14420 at 90.081 kb on + strand, within CSW01_14420 at 90.176 kb on + strand, within CSW01_14420 at 90.350 kb on - strand at 90.378 kb on - strand at 90.400 kb on + strand at 90.602 kb on + strand at 90.660 kb on + strand at 90.668 kb on - strand at 90.682 kb on + strand at 90.774 kb on + strand, within CSW01_14425 at 90.842 kb on + strand, within CSW01_14425 at 90.846 kb on - strand, within CSW01_14425 at 90.924 kb on + strand, within CSW01_14425 at 90.924 kb on + strand, within CSW01_14425 at 90.924 kb on + strand, within CSW01_14425 at 90.932 kb on - strand, within CSW01_14425 at 90.952 kb on + strand, within CSW01_14425 at 90.960 kb on - strand, within CSW01_14425 at 91.158 kb on - strand, within CSW01_14425 at 91.278 kb on + strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.286 kb on - strand, within CSW01_14425 at 91.313 kb on - strand, within CSW01_14425 at 91.455 kb on + strand, within CSW01_14425 at 91.483 kb on - strand, within CSW01_14425 at 91.486 kb on + strand, within CSW01_14425 at 91.535 kb on - strand, within CSW01_14425 at 91.576 kb on + strand, within CSW01_14425 at 91.633 kb on - strand, within CSW01_14425 at 91.697 kb on - strand, within CSW01_14425 at 91.750 kb on + strand, within CSW01_14425 at 91.753 kb on - strand, within CSW01_14425 at 92.145 kb on + strand, within CSW01_14425 at 92.170 kb on + strand, within CSW01_14425 at 92.170 kb on + strand, within CSW01_14425 at 92.170 kb on + strand, within CSW01_14425 at 92.170 kb on + strand, within CSW01_14425 at 92.178 kb on - strand, within CSW01_14425 at 92.178 kb on - strand, within CSW01_14425 at 92.178 kb on - strand, within CSW01_14425 at 92.178 kb on - strand, within CSW01_14425 at 92.178 kb on - strand, within CSW01_14425 at 92.178 kb on - strand, within CSW01_14425 at 92.252 kb on + strand at 92.752 kb on + strand, within CSW01_14430 at 92.752 kb on + strand, within CSW01_14430 at 92.814 kb on + strand, within CSW01_14430 at 92.840 kb on - strand, within CSW01_14430 at 92.910 kb on + strand, within CSW01_14430 at 92.910 kb on + strand, within CSW01_14430 at 92.910 kb on + strand, within CSW01_14430 at 92.915 kb on + strand, within CSW01_14430 at 92.923 kb on - strand, within CSW01_14430 at 92.923 kb on - strand, within CSW01_14430 at 92.932 kb on - strand, within CSW01_14430 at 93.060 kb on - strand, within CSW01_14430 at 93.081 kb on - strand, within CSW01_14430 at 93.138 kb on - strand, within CSW01_14430 at 93.217 kb on - strand, within CSW01_14430 at 93.217 kb on - strand, within CSW01_14430 at 93.217 kb on - strand, within CSW01_14430
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A remove 89,576 + CSW01_14420 0.33 -0.7 89,584 - CSW01_14420 0.34 -0.3 89,908 + CSW01_14420 0.59 +0.5 90,010 - CSW01_14420 0.67 +0.5 90,071 + CSW01_14420 0.71 -0.4 90,071 + CSW01_14420 0.71 +0.3 90,071 + CSW01_14420 0.71 -0.6 90,081 + CSW01_14420 0.72 +1.7 90,176 + CSW01_14420 0.80 +2.0 90,350 - -0.4 90,378 - +0.6 90,400 + +0.4 90,602 + -0.3 90,660 + -0.3 90,668 - +0.9 90,682 + +0.1 90,774 + CSW01_14425 0.12 -1.0 90,842 + CSW01_14425 0.16 -0.6 90,846 - CSW01_14425 0.16 -0.4 90,924 + CSW01_14425 0.20 -0.0 90,924 + CSW01_14425 0.20 -1.3 90,924 + CSW01_14425 0.20 -0.5 90,932 - CSW01_14425 0.21 -0.2 90,952 + CSW01_14425 0.22 -0.3 90,960 - CSW01_14425 0.22 -0.1 91,158 - CSW01_14425 0.33 -0.5 91,278 + CSW01_14425 0.40 -1.0 91,286 - CSW01_14425 0.40 +0.3 91,286 - CSW01_14425 0.40 +0.8 91,286 - CSW01_14425 0.40 -0.7 91,286 - CSW01_14425 0.40 +1.2 91,313 - CSW01_14425 0.41 +0.3 91,455 + CSW01_14425 0.49 +0.5 91,483 - CSW01_14425 0.51 +0.2 91,486 + CSW01_14425 0.51 -1.5 91,535 - CSW01_14425 0.54 +1.0 91,576 + CSW01_14425 0.56 -1.1 91,633 - CSW01_14425 0.59 +0.3 91,697 - CSW01_14425 0.62 -0.1 91,750 + CSW01_14425 0.65 -1.0 91,753 - CSW01_14425 0.66 +0.1 92,145 + CSW01_14425 0.87 -2.4 92,170 + CSW01_14425 0.88 -0.3 92,170 + CSW01_14425 0.88 -1.5 92,170 + CSW01_14425 0.88 +0.3 92,170 + CSW01_14425 0.88 -0.0 92,178 - CSW01_14425 0.89 +1.4 92,178 - CSW01_14425 0.89 +0.5 92,178 - CSW01_14425 0.89 +0.9 92,178 - CSW01_14425 0.89 +0.2 92,178 - CSW01_14425 0.89 -0.6 92,178 - CSW01_14425 0.89 +0.2 92,252 + +0.9 92,752 + CSW01_14430 0.17 +1.1 92,752 + CSW01_14430 0.17 -0.8 92,814 + CSW01_14430 0.24 +0.5 92,840 - CSW01_14430 0.27 +0.4 92,910 + CSW01_14430 0.35 -0.3 92,910 + CSW01_14430 0.35 -0.7 92,910 + CSW01_14430 0.35 -0.2 92,915 + CSW01_14430 0.35 -0.9 92,923 - CSW01_14430 0.36 +0.7 92,923 - CSW01_14430 0.36 -0.6 92,932 - CSW01_14430 0.37 +0.1 93,060 - CSW01_14430 0.51 -0.1 93,081 - CSW01_14430 0.54 +0.8 93,138 - CSW01_14430 0.60 -0.4 93,217 - CSW01_14430 0.69 +0.1 93,217 - CSW01_14430 0.69 -0.5 93,217 - CSW01_14430 0.69 -0.3
Or see this region's nucleotide sequence