Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13355

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_180MIN_ZN15A
2,842,245	-		CSW01_13350	0.48	+0.3
2,842,245	-		CSW01_13350	0.48	+1.0
2,842,329	+		CSW01_13350	0.54	+1.1
2,842,376	+		CSW01_13350	0.57	-1.5
2,842,381	+		CSW01_13350	0.58	+0.2
2,842,384	-		CSW01_13350	0.58	-1.3
2,842,385	-		CSW01_13350	0.58	-0.2
2,842,389	-		CSW01_13350	0.58	+0.6
2,842,400	-		CSW01_13350	0.59	-0.3
2,842,417	+		CSW01_13350	0.60	-0.7
2,842,425	-		CSW01_13350	0.61	-0.1
2,842,425	-		CSW01_13350	0.61	-0.3
2,842,425	-		CSW01_13350	0.61	-0.3
2,842,425	-		CSW01_13350	0.61	+0.1
2,842,429	+		CSW01_13350	0.61	-0.0
2,842,447	-		CSW01_13350	0.62	-0.4
2,842,454	-		CSW01_13350	0.63	-0.6
2,842,480	-		CSW01_13350	0.64	+0.2
2,842,485	+		CSW01_13350	0.65	-0.2
2,842,514	+		CSW01_13350	0.67	-0.5
2,842,522	-		CSW01_13350	0.67	-0.4
2,842,522	-		CSW01_13350	0.67	+1.1
2,842,522	-		CSW01_13350	0.67	+0.0
2,842,542	-		CSW01_13350	0.69	+0.4
2,842,568	+		CSW01_13350	0.71	-0.5
2,842,568	+		CSW01_13350	0.71	-0.3
2,842,568	+		CSW01_13350	0.71	-0.8
2,842,568	+		CSW01_13350	0.71	+0.1
2,842,568	+		CSW01_13350	0.71	+0.3
2,842,568	+		CSW01_13350	0.71	-1.0
2,842,568	+		CSW01_13350	0.71	-0.5
2,842,568	+		CSW01_13350	0.71	-0.6
2,842,568	+		CSW01_13350	0.71	+1.1
2,842,568	+		CSW01_13350	0.71	-0.1
2,842,568	+		CSW01_13350	0.71	+3.0
2,842,568	+		CSW01_13350	0.71	-0.3
2,842,568	+		CSW01_13350	0.71	-0.5
2,842,568	+		CSW01_13350	0.71	+0.3
2,842,568	+		CSW01_13350	0.71	-0.4
2,842,576	-		CSW01_13350	0.71	+2.4
2,842,576	-		CSW01_13350	0.71	+0.3
2,842,576	-		CSW01_13350	0.71	+0.6
2,842,576	-		CSW01_13350	0.71	-1.2
2,842,576	-		CSW01_13350	0.71	-0.9
2,842,576	-		CSW01_13350	0.71	+0.0
2,842,576	-		CSW01_13350	0.71	-0.0
2,842,576	-		CSW01_13350	0.71	-0.1
2,842,576	-		CSW01_13350	0.71	+0.5
2,842,576	-		CSW01_13350	0.71	-0.3
2,842,576	-		CSW01_13350	0.71	+0.7
2,842,576	-		CSW01_13350	0.71	-0.1
2,842,576	-		CSW01_13350	0.71	-0.1
2,842,576	-		CSW01_13350	0.71	-0.5
2,842,632	+		CSW01_13350	0.75	+0.5
2,842,632	+		CSW01_13350	0.75	+1.0
2,842,632	+		CSW01_13350	0.75	+0.1
2,842,632	+		CSW01_13350	0.75	-1.2
2,842,632	+		CSW01_13350	0.75	-0.2
2,842,651	+		CSW01_13350	0.76	-0.2
2,842,671	+		CSW01_13350	0.78	-0.7
2,842,679	-		CSW01_13350	0.78	+1.5
2,842,729	+		CSW01_13350	0.82	+1.4
2,842,737	-		CSW01_13350	0.82	+0.4
2,842,748	-		CSW01_13350	0.83	+0.5
2,842,765	-		CSW01_13350	0.84	-0.5
2,842,772	-		CSW01_13350	0.85	+0.9
2,842,772	-		CSW01_13350	0.85	-0.1
2,842,806	-		CSW01_13350	0.87	-0.6
2,842,806	-		CSW01_13350	0.87	+0.1
2,842,836	-		CSW01_13350	0.89	-0.7
2,842,836	-		CSW01_13350	0.89	+0.8
2,842,857	-				-0.4
2,842,904	+				-0.1
2,842,906	+				-0.3
2,842,911	+				+0.3
2,842,911	+				+0.6
2,842,912	-				+1.3
2,842,916	+				+0.9
2,842,919	-				+0.4
2,842,919	-				-0.3
2,842,919	-				+0.3
2,842,919	-				-0.7
2,842,919	-				-0.6
2,842,919	-				-0.7
2,842,919	-				-1.2
2,842,919	-				+0.0
2,842,919	-				+0.1
2,842,919	-				+0.5
2,842,919	-				-0.2
2,842,924	-				-0.2
2,842,934	-				+0.1
2,842,960	+				+0.8
2,843,040	+				+1.1
2,843,047	+				+0.0
2,843,094	-				-0.1
2,843,109	+				-1.0
2,843,109	+				-1.4
2,843,109	+				-0.4
2,843,109	+				-0.6
2,843,109	+				-0.3
2,843,111	+				-0.8
2,843,111	+				+0.1
2,843,117	-				+0.1
2,843,117	-				-1.0
2,843,117	-				+0.4
2,843,117	-				+0.5
2,843,117	-				-0.4
2,843,117	-				-0.2
2,843,117	-				-0.0
2,843,117	-				+0.1
2,843,119	-				-0.7
2,843,119	-				+0.6
2,843,119	-				+1.3
2,843,129	-				-1.7
2,843,129	-				-0.9
2,843,151	+				-0.8
2,843,151	+				+0.7
2,843,151	+				+0.6
2,843,151	+				-0.1
2,843,153	+				-0.2
2,843,153	+				-0.3
2,843,153	+				-0.6
2,843,153	+				-0.1
2,843,153	+				-1.2
2,843,159	-				-0.1
2,843,159	-				-0.2
2,843,159	-				-2.4
2,843,159	-				-0.3
2,843,159	-				+0.2
2,843,159	-				-0.5
2,843,159	-				-0.4
2,843,161	-				+0.1
2,843,177	+				+0.9
2,843,253	-		CSW01_13355	0.12	-1.4
2,843,300	-		CSW01_13355	0.30	-0.3
2,843,300	-		CSW01_13355	0.30	-0.2
2,843,300	-		CSW01_13355	0.30	-0.6
2,843,309	+		CSW01_13355	0.33	+0.3
2,843,365	-		CSW01_13355	0.54	+0.5
2,843,411	+		CSW01_13355	0.72	+0.2
2,843,446	+		CSW01_13355	0.85	+0.5
2,843,587	+				+0.2
2,843,587	-				-0.1
2,843,595	-				+0.4
2,843,595	-				-0.3
2,843,595	-				+0.2
2,843,595	-				-0.1
2,843,614	-				+0.6
2,843,735	+				-0.8
2,843,751	+				-0.5
2,843,751	+				+0.1
2,843,759	-				-0.0
2,843,846	+				+0.2
2,843,869	+				-0.2
2,843,911	+		CSW01_13360	0.13	-0.1
2,843,911	+		CSW01_13360	0.13	+0.1
2,843,918	-		CSW01_13360	0.13	-0.6
2,844,013	-		CSW01_13360	0.20	-1.2
2,844,032	-		CSW01_13360	0.21	-0.3
2,844,038	+		CSW01_13360	0.22	-1.4
2,844,046	-		CSW01_13360	0.23	-0.2
2,844,112	+		CSW01_13360	0.27	+1.4
2,844,139	-		CSW01_13360	0.29	-0.5
2,844,162	+		CSW01_13360	0.31	-0.1
2,844,178	+		CSW01_13360	0.32	-0.1
2,844,179	-		CSW01_13360	0.32	-1.1
2,844,211	+		CSW01_13360	0.34	+1.7
2,844,211	+		CSW01_13360	0.34	-0.6
2,844,211	+		CSW01_13360	0.34	+0.6
2,844,218	-		CSW01_13360	0.35	+0.4
2,844,219	-		CSW01_13360	0.35	-0.4
2,844,219	-		CSW01_13360	0.35	-0.3
2,844,219	-		CSW01_13360	0.35	+0.4
2,844,219	-		CSW01_13360	0.35	-2.6
2,844,219	-		CSW01_13360	0.35	+1.1
2,844,219	-		CSW01_13360	0.35	-0.1
2,844,292	-		CSW01_13360	0.40	+0.1
2,844,292	-		CSW01_13360	0.40	+1.0
2,844,404	-		CSW01_13360	0.49	-0.0