Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12030

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_180MIN_ZN15A
2,568,068	+		CSW01_12025	0.69	-0.3
2,568,068	+		CSW01_12025	0.69	-0.7
2,568,068	+		CSW01_12025	0.69	-0.4
2,568,068	+		CSW01_12025	0.69	+0.3
2,568,068	+		CSW01_12025	0.69	+0.8
2,568,068	+		CSW01_12025	0.69	+1.8
2,568,068	+		CSW01_12025	0.69	-0.1
2,568,076	-		CSW01_12025	0.69	+0.3
2,568,076	-		CSW01_12025	0.69	-0.0
2,568,076	-		CSW01_12025	0.69	+0.4
2,568,076	-		CSW01_12025	0.69	-0.7
2,568,108	-		CSW01_12025	0.72	-0.6
2,568,154	+		CSW01_12025	0.75	+1.5
2,568,154	+		CSW01_12025	0.75	+0.3
2,568,157	-		CSW01_12025	0.75	+0.6
2,568,184	+		CSW01_12025	0.77	-0.2
2,568,220	+		CSW01_12025	0.79	-0.0
2,568,228	-		CSW01_12025	0.80	+0.1
2,568,279	-		CSW01_12025	0.83	+1.1
2,568,290	-		CSW01_12025	0.84	-0.2
2,568,320	+		CSW01_12025	0.86	+0.5
2,568,328	-		CSW01_12025	0.87	+0.6
2,568,328	-		CSW01_12025	0.87	+0.5
2,568,330	+		CSW01_12025	0.87	-0.1
2,568,373	+		CSW01_12025	0.90	-0.2
2,568,396	-				+0.7
2,568,403	+				-1.1
2,568,403	+				+0.6
2,568,403	+				+0.2
2,568,411	-				+1.3
2,568,415	+				+0.1
2,568,444	-				+0.1
2,568,463	+				-0.9
2,568,482	-				+0.2
2,568,506	+				-1.1
2,568,514	-				+0.7
2,568,514	-				+0.6
2,568,514	-				+0.9
2,568,520	+				+0.1
2,568,520	+				+0.1
2,568,528	-				-0.0
2,568,528	-				+0.2
2,568,528	-				-0.5
2,568,549	+				-1.1
2,568,549	+				+0.3
2,568,565	+				-0.9
2,568,573	-				-0.2
2,568,606	-				+0.3
2,568,610	+				+0.8
2,568,618	-				+0.9
2,568,645	+				-0.5
2,568,645	+				-0.0
2,568,653	-				-0.4
2,568,653	-				+1.3
2,568,653	-				-1.9
2,568,653	-				-0.1
2,568,653	-				+0.8
2,568,660	-				-0.7
2,568,764	-				-0.7
2,568,988	+				+0.1
2,568,996	+				+0.1
2,568,996	-				-0.7
2,569,056	+				+0.9
2,569,056	+				+0.3
2,569,056	+				+0.6
2,569,127	-				+0.7
2,569,200	+				+0.8
2,569,207	-				+0.1
2,569,224	-				-0.3
2,569,232	+				-0.6
2,569,319	-				+1.2
2,569,346	-				-1.0
2,569,391	-				-0.3
2,569,410	+				-0.7
2,569,418	-				-0.3
2,569,452	-				-1.1
2,569,473	+				+0.6
2,569,518	-		CSW01_12030	0.10	+0.0
2,569,602	-		CSW01_12030	0.12	-0.5
2,569,617	+		CSW01_12030	0.13	-0.4
2,569,617	+		CSW01_12030	0.13	+0.3
2,569,617	+		CSW01_12030	0.13	+0.0
2,569,622	+		CSW01_12030	0.13	+0.3
2,569,622	+		CSW01_12030	0.13	+0.2
2,569,625	-		CSW01_12030	0.13	+0.4
2,569,625	-		CSW01_12030	0.13	-0.4
2,569,625	-		CSW01_12030	0.13	+0.2
2,569,625	-		CSW01_12030	0.13	-0.0
2,569,732	-		CSW01_12030	0.15	+0.3
2,569,783	+		CSW01_12030	0.16	+0.6
2,569,785	+		CSW01_12030	0.16	+0.5
2,569,861	-		CSW01_12030	0.18	+0.2
2,569,902	-		CSW01_12030	0.19	-0.4
2,569,902	-		CSW01_12030	0.19	-0.3
2,569,902	-		CSW01_12030	0.19	+0.7
2,569,902	-		CSW01_12030	0.19	+0.6
2,569,907	-		CSW01_12030	0.19	-0.1
2,569,930	-		CSW01_12030	0.20	-1.3
2,569,971	-		CSW01_12030	0.21	+0.8
2,569,971	-		CSW01_12030	0.21	-1.7
2,570,025	+		CSW01_12030	0.22	-0.3
2,570,042	+		CSW01_12030	0.22	-0.3
2,570,048	+		CSW01_12030	0.22	+0.1
2,570,056	-		CSW01_12030	0.22	-0.2
2,570,056	-		CSW01_12030	0.22	-0.4
2,570,071	-		CSW01_12030	0.23	+0.2
2,570,073	+		CSW01_12030	0.23	-1.7
2,570,098	+		CSW01_12030	0.23	-0.6
2,570,104	+		CSW01_12030	0.24	+1.9
2,570,112	-		CSW01_12030	0.24	+0.8
2,570,113	+		CSW01_12030	0.24	+0.1
2,570,164	-		CSW01_12030	0.25	+0.5
2,570,315	+		CSW01_12030	0.28	+0.7
2,570,315	+		CSW01_12030	0.28	+0.5
2,570,315	+		CSW01_12030	0.28	+0.3
2,570,323	-		CSW01_12030	0.28	+0.1
2,570,323	-		CSW01_12030	0.28	+0.4
2,570,369	+		CSW01_12030	0.29	+0.5
2,570,401	-		CSW01_12030	0.30	+1.0
2,570,597	-		CSW01_12030	0.35	-0.2
2,570,682	+		CSW01_12030	0.36	+0.3
2,570,729	-		CSW01_12030	0.38	+0.4
2,570,731	+		CSW01_12030	0.38	-0.1
2,570,731	+		CSW01_12030	0.38	+2.3
2,570,737	-		CSW01_12030	0.38	-0.0
2,570,832	+		CSW01_12030	0.40	+0.1
2,570,832	+		CSW01_12030	0.40	-0.3
2,570,840	-		CSW01_12030	0.40	-0.9
2,570,886	+		CSW01_12030	0.41	-0.3
2,570,930	-		CSW01_12030	0.42	+0.7
2,570,950	+		CSW01_12030	0.42	-0.3
2,570,955	+		CSW01_12030	0.43	+0.3
2,570,955	+		CSW01_12030	0.43	+0.4
2,570,955	+		CSW01_12030	0.43	+1.2
2,570,955	+		CSW01_12030	0.43	+0.2
2,570,955	+		CSW01_12030	0.43	-0.5
2,570,955	+		CSW01_12030	0.43	-0.5
2,570,955	+		CSW01_12030	0.43	+0.0
2,570,955	+		CSW01_12030	0.43	-0.3
2,570,963	-		CSW01_12030	0.43	+0.0
2,570,963	-		CSW01_12030	0.43	-0.8
2,570,963	-		CSW01_12030	0.43	+0.2
2,570,963	-		CSW01_12030	0.43	-0.0
2,570,963	-		CSW01_12030	0.43	-0.1
2,570,963	-		CSW01_12030	0.43	+1.9
2,570,963	-		CSW01_12030	0.43	+0.2
2,570,963	-		CSW01_12030	0.43	+0.5
2,570,969	+		CSW01_12030	0.43	-1.7
2,570,977	-		CSW01_12030	0.43	+0.3
2,571,011	+		CSW01_12030	0.44	+0.2
2,571,056	+		CSW01_12030	0.45	+1.0
2,571,071	+		CSW01_12030	0.45	+0.2
2,571,126	+		CSW01_12030	0.46	+0.1
2,571,126	+		CSW01_12030	0.46	-0.4
2,571,173	+		CSW01_12030	0.47	-0.4
2,571,173	+		CSW01_12030	0.47	+0.4
2,571,175	+		CSW01_12030	0.48	+0.9
2,571,175	+		CSW01_12030	0.48	-0.2
2,571,235	+		CSW01_12030	0.49	+0.4
2,571,235	+		CSW01_12030	0.49	+0.1
2,571,243	-		CSW01_12030	0.49	-0.5
2,571,243	-		CSW01_12030	0.49	+0.3
2,571,243	-		CSW01_12030	0.49	-0.0
2,571,243	-		CSW01_12030	0.49	-0.1
2,571,245	+		CSW01_12030	0.49	+0.2
2,571,253	-		CSW01_12030	0.49	+0.4
2,571,258	+		CSW01_12030	0.49	-0.1
2,571,266	-		CSW01_12030	0.50	+0.2
2,571,276	+		CSW01_12030	0.50	-0.2
2,571,308	+		CSW01_12030	0.51	+0.2
2,571,393	+		CSW01_12030	0.52	+0.4
2,571,431	-		CSW01_12030	0.53	-0.2
2,571,442	+		CSW01_12030	0.54	+0.3
2,571,442	+		CSW01_12030	0.54	+0.8
2,571,442	+		CSW01_12030	0.54	-0.7
2,571,442	+		CSW01_12030	0.54	-0.3
2,571,450	-		CSW01_12030	0.54	-0.5
2,571,460	-		CSW01_12030	0.54	+0.0
2,571,534	+		CSW01_12030	0.56	-0.7
2,571,534	+		CSW01_12030	0.56	+0.9
2,571,604	-		CSW01_12030	0.57	+0.5
2,571,649	-		CSW01_12030	0.58	+0.8
2,571,661	+		CSW01_12030	0.58	-0.1
2,571,678	+		CSW01_12030	0.59	+0.5
2,571,678	+		CSW01_12030	0.59	-0.4
2,571,678	+		CSW01_12030	0.59	-0.4
2,571,678	+		CSW01_12030	0.59	-0.4
2,571,678	+		CSW01_12030	0.59	+0.7
2,571,678	+		CSW01_12030	0.59	+0.4
2,571,686	-		CSW01_12030	0.59	-0.5
2,571,686	-		CSW01_12030	0.59	-0.0
2,571,686	-		CSW01_12030	0.59	+1.0
2,571,723	+		CSW01_12030	0.60	+0.6
2,571,731	-		CSW01_12030	0.60	+0.2
2,571,749	+		CSW01_12030	0.60	+0.2
2,571,782	+		CSW01_12030	0.61	+0.5
2,571,802	+		CSW01_12030	0.62	+0.0
2,571,812	+		CSW01_12030	0.62	+0.5
2,571,850	-		CSW01_12030	0.63	-0.1
2,571,899	+		CSW01_12030	0.64	-0.5
2,571,923	+		CSW01_12030	0.64	-0.4
2,571,931	-		CSW01_12030	0.64	+0.5
2,571,931	-		CSW01_12030	0.64	+0.6
2,571,931	-		CSW01_12030	0.64	-0.8
2,571,931	-		CSW01_12030	0.64	-0.0
2,571,948	-		CSW01_12030	0.65	+1.0
2,572,022	+		CSW01_12030	0.67	+0.9
2,572,028	+		CSW01_12030	0.67	+0.3
2,572,035	+		CSW01_12030	0.67	+0.2
2,572,035	-		CSW01_12030	0.67	+0.1
2,572,046	+		CSW01_12030	0.67	+0.6
2,572,048	-		CSW01_12030	0.67	+0.8
2,572,129	-		CSW01_12030	0.69	+0.1
2,572,142	-		CSW01_12030	0.69	+3.1
2,572,155	+		CSW01_12030	0.69	+0.2
2,572,155	-		CSW01_12030	0.69	-1.0
2,572,226	-		CSW01_12030	0.71	+0.6
2,572,292	+		CSW01_12030	0.73	-2.7
2,572,292	+		CSW01_12030	0.73	+0.9
2,572,300	-		CSW01_12030	0.73	+0.6
2,572,300	-		CSW01_12030	0.73	-0.1
2,572,300	-		CSW01_12030	0.73	-1.4
2,572,383	+		CSW01_12030	0.75	+0.1
2,572,383	+		CSW01_12030	0.75	+2.4
2,572,383	+		CSW01_12030	0.75	+1.1
2,572,391	-		CSW01_12030	0.75	-0.2
2,572,391	-		CSW01_12030	0.75	-1.0
2,572,423	-		CSW01_12030	0.75	-0.3
2,572,447	-		CSW01_12030	0.76	-0.1
2,572,559	+		CSW01_12030	0.79	-0.5
2,572,559	+		CSW01_12030	0.79	+0.6
2,572,567	-		CSW01_12030	0.79	+0.2
2,572,574	+		CSW01_12030	0.79	-0.3
2,572,605	-		CSW01_12030	0.80	+0.4
2,572,616	+		CSW01_12030	0.80	+0.3
2,572,652	+		CSW01_12030	0.81	-3.2
2,572,652	+		CSW01_12030	0.81	+0.3
2,572,652	+		CSW01_12030	0.81	-0.8
2,572,652	+		CSW01_12030	0.81	-0.3
2,572,652	+		CSW01_12030	0.81	+0.2
2,572,652	+		CSW01_12030	0.81	+0.3
2,572,652	+		CSW01_12030	0.81	+0.8
2,572,652	+		CSW01_12030	0.81	+0.4
2,572,652	+		CSW01_12030	0.81	+1.6
2,572,652	+		CSW01_12030	0.81	+0.1
2,572,652	+		CSW01_12030	0.81	+0.8
2,572,652	+		CSW01_12030	0.81	-0.2
2,572,652	+		CSW01_12030	0.81	+0.1
2,572,660	-		CSW01_12030	0.81	-1.3
2,572,660	-		CSW01_12030	0.81	+0.1
2,572,660	-		CSW01_12030	0.81	-0.0
2,572,660	-		CSW01_12030	0.81	+0.9
2,572,660	-		CSW01_12030	0.81	+0.3
2,572,660	-		CSW01_12030	0.81	+0.3
2,572,660	-		CSW01_12030	0.81	+0.2
2,572,660	-		CSW01_12030	0.81	-0.3
2,572,684	-		CSW01_12030	0.81	+1.6
2,572,766	+		CSW01_12030	0.83	+0.0
2,572,817	+		CSW01_12030	0.84	-0.9
2,572,858	-		CSW01_12030	0.85	-0.1
2,572,895	+		CSW01_12030	0.86	+0.0
2,572,909	+		CSW01_12030	0.86	+0.4
2,572,909	+		CSW01_12030	0.86	-0.1
2,572,917	-		CSW01_12030	0.87	-0.0
2,572,917	-		CSW01_12030	0.87	+0.8
2,572,917	-		CSW01_12030	0.87	+0.4
2,572,917	-		CSW01_12030	0.87	+0.9
2,572,955	+		CSW01_12030	0.87	+0.3
2,572,963	-		CSW01_12030	0.88	+0.0
2,572,989	+		CSW01_12030	0.88	+1.3
2,572,997	-		CSW01_12030	0.88	-0.7
2,572,997	-		CSW01_12030	0.88	-0.6
2,573,067	-		CSW01_12030	0.90	+0.1
2,573,069	-		CSW01_12030	0.90	+0.2
2,573,078	+				+0.1
2,573,105	+				+0.6
2,573,105	+				+0.5
2,573,111	-				+2.0
2,573,113	-				+0.4
2,573,119	+				+0.1
2,573,137	-				+0.3
2,573,142	+				-0.0
2,573,199	+				+0.6
2,573,199	+				-0.1
2,573,225	-				-0.2
2,573,225	-				+0.7
2,573,225	-				-0.4
2,573,225	-				+0.7
2,573,287	+				+0.4
2,573,331	+				+0.6
2,573,453	+				-0.1
2,573,455	+				+0.5
2,573,472	+				+0.2
2,573,488	+				+0.4
2,573,490	+				-0.1
2,573,496	-				-0.0
2,573,498	-				+0.1
2,573,524	-				+0.0
2,573,528	-				-0.5
2,573,547	-				+0.3
2,573,547	-				+0.2
2,573,547	-				-0.1
2,573,572	+				-0.3
2,573,638	+				+0.2
2,573,654	-				+0.6
2,573,658	+				+0.7
2,573,666	-				+0.1
2,573,683	+		CSW01_12035	0.10	+0.3
2,573,690	+		CSW01_12035	0.11	-0.2
2,573,690	+		CSW01_12035	0.11	+0.6
2,573,690	+		CSW01_12035	0.11	-0.2
2,573,690	+		CSW01_12035	0.11	-0.6
2,573,690	+		CSW01_12035	0.11	+0.3
2,573,690	+		CSW01_12035	0.11	+1.9
2,573,690	+		CSW01_12035	0.11	+0.3
2,573,690	+		CSW01_12035	0.11	-0.1
2,573,690	+		CSW01_12035	0.11	-0.2
2,573,690	+		CSW01_12035	0.11	-1.7
2,573,690	+		CSW01_12035	0.11	+0.3
2,573,698	-		CSW01_12035	0.12	+1.2
2,573,698	-		CSW01_12035	0.12	+1.6
2,573,698	-		CSW01_12035	0.12	+0.2
2,573,698	-		CSW01_12035	0.12	-0.3
2,573,698	-		CSW01_12035	0.12	-0.0
2,573,698	-		CSW01_12035	0.12	+0.1
2,573,698	-		CSW01_12035	0.12	-0.2
2,573,708	-		CSW01_12035	0.12	+0.3
2,573,708	-		CSW01_12035	0.12	+0.4
2,573,708	-		CSW01_12035	0.12	-0.6
2,573,715	+		CSW01_12035	0.13	-0.1
2,573,737	+		CSW01_12035	0.14	+0.1
2,573,737	+		CSW01_12035	0.14	+0.8
2,573,737	+		CSW01_12035	0.14	-0.2
2,573,737	+		CSW01_12035	0.14	-0.7
2,573,737	+		CSW01_12035	0.14	-0.2
2,573,737	+		CSW01_12035	0.14	-0.0
2,573,737	+		CSW01_12035	0.14	+0.0
2,573,737	+		CSW01_12035	0.14	+1.5
2,573,745	-		CSW01_12035	0.15	+0.5
2,573,745	-		CSW01_12035	0.15	-0.1
2,573,745	-		CSW01_12035	0.15	+0.2
2,573,745	-		CSW01_12035	0.15	-0.2
2,573,745	-		CSW01_12035	0.15	+0.7
2,573,745	-		CSW01_12035	0.15	+0.4
2,573,745	-		CSW01_12035	0.15	+0.1
2,573,745	-		CSW01_12035	0.15	-0.4
2,573,745	-		CSW01_12035	0.15	-0.6
2,573,745	-		CSW01_12035	0.15	+1.0
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2,573,745	-		CSW01_12035	0.15	-0.7
2,573,795	-		CSW01_12035	0.18	-0.6
2,573,795	-		CSW01_12035	0.18	+0.2
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2,574,040	+		CSW01_12035	0.36	+0.0
2,574,048	-		CSW01_12035	0.36	+0.6
2,574,048	-		CSW01_12035	0.36	+0.2
2,574,084	+		CSW01_12035	0.39	-0.7
2,574,345	-		CSW01_12035	0.57	-0.1
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2,574,423	+		CSW01_12035	0.63	+0.3
2,574,423	+		CSW01_12035	0.63	-0.7