Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_11730 and CSW01_11735 overlap by 16 nucleotides CSW01_11735 and CSW01_11740 overlap by 14 nucleotides
CSW01_11730: CSW01_11730 - 2-dehydropantoate 2-reductase, at 2,490,172 to 2,491,062
_11730
CSW01_11735: CSW01_11735 - DJ-1 family protein, at 2,491,047 to 2,491,664
_11735
CSW01_11740: CSW01_11740 - cysteine desulfurase CsdA, at 2,491,651 to 2,492,862
_11740
Position (kb)
2491
2492 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2490.177 kb on - strand at 2490.233 kb on + strand at 2490.278 kb on + strand, within CSW01_11730 at 2490.286 kb on + strand, within CSW01_11730 at 2490.375 kb on + strand, within CSW01_11730 at 2490.518 kb on + strand, within CSW01_11730 at 2490.585 kb on - strand, within CSW01_11730 at 2490.682 kb on + strand, within CSW01_11730 at 2490.843 kb on + strand, within CSW01_11730 at 2490.851 kb on - strand, within CSW01_11730 at 2490.851 kb on - strand, within CSW01_11730 at 2490.976 kb on + strand at 2491.000 kb on + strand at 2491.000 kb on + strand at 2491.034 kb on + strand at 2491.034 kb on + strand at 2491.152 kb on - strand, within CSW01_11735 at 2491.193 kb on - strand, within CSW01_11735 at 2491.201 kb on - strand, within CSW01_11735 at 2491.209 kb on - strand, within CSW01_11735 at 2491.213 kb on + strand, within CSW01_11735 at 2491.225 kb on + strand, within CSW01_11735 at 2491.225 kb on + strand, within CSW01_11735 at 2491.227 kb on + strand, within CSW01_11735 at 2491.233 kb on - strand, within CSW01_11735 at 2491.233 kb on - strand, within CSW01_11735 at 2491.233 kb on - strand, within CSW01_11735 at 2491.268 kb on + strand, within CSW01_11735 at 2491.268 kb on + strand, within CSW01_11735 at 2491.275 kb on + strand, within CSW01_11735 at 2491.275 kb on + strand, within CSW01_11735 at 2491.276 kb on - strand, within CSW01_11735 at 2491.287 kb on + strand, within CSW01_11735 at 2491.287 kb on + strand, within CSW01_11735 at 2491.385 kb on + strand, within CSW01_11735 at 2491.393 kb on - strand, within CSW01_11735 at 2491.533 kb on + strand, within CSW01_11735 at 2491.541 kb on - strand, within CSW01_11735 at 2491.541 kb on - strand, within CSW01_11735 at 2491.555 kb on + strand, within CSW01_11735 at 2491.555 kb on + strand, within CSW01_11735 at 2491.555 kb on + strand, within CSW01_11735 at 2491.555 kb on + strand, within CSW01_11735 at 2491.563 kb on - strand, within CSW01_11735 at 2491.565 kb on + strand, within CSW01_11735 at 2491.565 kb on + strand, within CSW01_11735 at 2491.573 kb on - strand, within CSW01_11735 at 2491.574 kb on + strand, within CSW01_11735 at 2491.584 kb on + strand, within CSW01_11735 at 2491.652 kb on + strand at 2491.719 kb on + strand at 2491.721 kb on - strand at 2491.727 kb on - strand at 2491.727 kb on - strand at 2491.889 kb on - strand, within CSW01_11740 at 2491.936 kb on + strand, within CSW01_11740 at 2492.003 kb on + strand, within CSW01_11740 at 2492.152 kb on + strand, within CSW01_11740 at 2492.201 kb on - strand, within CSW01_11740 at 2492.218 kb on + strand, within CSW01_11740 at 2492.273 kb on + strand, within CSW01_11740 at 2492.336 kb on - strand, within CSW01_11740 at 2492.350 kb on - strand, within CSW01_11740 at 2492.355 kb on - strand, within CSW01_11740 at 2492.429 kb on - strand, within CSW01_11740 at 2492.429 kb on - strand, within CSW01_11740 at 2492.435 kb on + strand, within CSW01_11740 at 2492.440 kb on + strand, within CSW01_11740 at 2492.443 kb on - strand, within CSW01_11740 at 2492.500 kb on + strand, within CSW01_11740 at 2492.500 kb on + strand, within CSW01_11740 at 2492.508 kb on - strand, within CSW01_11740 at 2492.508 kb on - strand, within CSW01_11740 at 2492.508 kb on - strand, within CSW01_11740 at 2492.508 kb on - strand, within CSW01_11740 at 2492.513 kb on + strand, within CSW01_11740 at 2492.639 kb on + strand, within CSW01_11740 at 2492.644 kb on + strand, within CSW01_11740 at 2492.644 kb on + strand, within CSW01_11740 at 2492.644 kb on + strand, within CSW01_11740 at 2492.644 kb on + strand, within CSW01_11740 at 2492.644 kb on + strand, within CSW01_11740 at 2492.644 kb on + strand, within CSW01_11740 at 2492.644 kb on + strand, within CSW01_11740 at 2492.652 kb on - strand, within CSW01_11740 at 2492.652 kb on - strand, within CSW01_11740
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A remove 2,490,177 - +0.3 2,490,233 + +0.3 2,490,278 + CSW01_11730 0.12 -0.1 2,490,286 + CSW01_11730 0.13 -2.3 2,490,375 + CSW01_11730 0.23 -1.9 2,490,518 + CSW01_11730 0.39 +0.3 2,490,585 - CSW01_11730 0.46 +0.3 2,490,682 + CSW01_11730 0.57 +2.6 2,490,843 + CSW01_11730 0.75 +1.3 2,490,851 - CSW01_11730 0.76 -1.7 2,490,851 - CSW01_11730 0.76 -2.4 2,490,976 + -1.1 2,491,000 + +1.3 2,491,000 + +1.3 2,491,034 + -0.3 2,491,034 + -0.2 2,491,152 - CSW01_11735 0.17 -0.2 2,491,193 - CSW01_11735 0.24 -1.0 2,491,201 - CSW01_11735 0.25 +0.5 2,491,209 - CSW01_11735 0.26 +0.4 2,491,213 + CSW01_11735 0.27 +0.0 2,491,225 + CSW01_11735 0.29 +0.7 2,491,225 + CSW01_11735 0.29 -0.2 2,491,227 + CSW01_11735 0.29 -0.7 2,491,233 - CSW01_11735 0.30 -0.9 2,491,233 - CSW01_11735 0.30 -0.4 2,491,233 - CSW01_11735 0.30 -1.2 2,491,268 + CSW01_11735 0.36 +0.7 2,491,268 + CSW01_11735 0.36 -0.0 2,491,275 + CSW01_11735 0.37 +0.3 2,491,275 + CSW01_11735 0.37 +0.0 2,491,276 - CSW01_11735 0.37 +0.4 2,491,287 + CSW01_11735 0.39 +0.8 2,491,287 + CSW01_11735 0.39 +1.1 2,491,385 + CSW01_11735 0.55 +0.1 2,491,393 - CSW01_11735 0.56 -0.1 2,491,533 + CSW01_11735 0.79 -0.9 2,491,541 - CSW01_11735 0.80 -0.7 2,491,541 - CSW01_11735 0.80 -0.5 2,491,555 + CSW01_11735 0.82 +1.1 2,491,555 + CSW01_11735 0.82 -1.0 2,491,555 + CSW01_11735 0.82 +0.9 2,491,555 + CSW01_11735 0.82 -0.1 2,491,563 - CSW01_11735 0.83 -0.7 2,491,565 + CSW01_11735 0.84 -1.0 2,491,565 + CSW01_11735 0.84 -0.5 2,491,573 - CSW01_11735 0.85 -1.6 2,491,574 + CSW01_11735 0.85 +0.8 2,491,584 + CSW01_11735 0.87 -0.4 2,491,652 + -0.4 2,491,719 + +1.9 2,491,721 - +0.3 2,491,727 - -0.6 2,491,727 - -0.2 2,491,889 - CSW01_11740 0.20 +0.1 2,491,936 + CSW01_11740 0.24 +1.3 2,492,003 + CSW01_11740 0.29 +0.2 2,492,152 + CSW01_11740 0.41 -0.4 2,492,201 - CSW01_11740 0.45 -2.0 2,492,218 + CSW01_11740 0.47 -0.1 2,492,273 + CSW01_11740 0.51 -0.1 2,492,336 - CSW01_11740 0.57 -0.8 2,492,350 - CSW01_11740 0.58 +1.3 2,492,355 - CSW01_11740 0.58 -0.3 2,492,429 - CSW01_11740 0.64 +1.3 2,492,429 - CSW01_11740 0.64 +0.0 2,492,435 + CSW01_11740 0.65 -0.2 2,492,440 + CSW01_11740 0.65 +1.1 2,492,443 - CSW01_11740 0.65 +0.3 2,492,500 + CSW01_11740 0.70 +0.1 2,492,500 + CSW01_11740 0.70 -0.1 2,492,508 - CSW01_11740 0.71 -0.1 2,492,508 - CSW01_11740 0.71 -1.1 2,492,508 - CSW01_11740 0.71 -0.9 2,492,508 - CSW01_11740 0.71 -0.5 2,492,513 + CSW01_11740 0.71 -0.3 2,492,639 + CSW01_11740 0.82 -0.9 2,492,644 + CSW01_11740 0.82 -1.0 2,492,644 + CSW01_11740 0.82 +0.0 2,492,644 + CSW01_11740 0.82 +0.4 2,492,644 + CSW01_11740 0.82 +0.4 2,492,644 + CSW01_11740 0.82 +0.0 2,492,644 + CSW01_11740 0.82 -1.0 2,492,644 + CSW01_11740 0.82 -0.2 2,492,652 - CSW01_11740 0.83 -0.6 2,492,652 - CSW01_11740 0.83 -1.1
Or see this region's nucleotide sequence