Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11515

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_11510 and CSW01_11515 are separated by 340 nucleotidesCSW01_11515 and CSW01_11520 are separated by 89 nucleotides CSW01_11510: CSW01_11510 - 30S ribosomal protein S2, at 2,446,788 to 2,447,516 _11510 CSW01_11515: CSW01_11515 - type I methionyl aminopeptidase, at 2,447,857 to 2,448,699 _11515 CSW01_11520: CSW01_11520 - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 2,448,789 to 2,451,434 _11520 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2447.791 kb on + strandat 2447.837 kb on + strandat 2448.869 kb on + strandat 2448.933 kb on + strandat 2449.183 kb on + strand, within CSW01_11520at 2449.336 kb on + strand, within CSW01_11520at 2449.428 kb on - strand, within CSW01_11520at 2449.452 kb on - strand, within CSW01_11520at 2449.536 kb on - strand, within CSW01_11520at 2449.596 kb on + strand, within CSW01_11520

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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2,447,791 + -0.9
2,447,837 + -1.3
2,448,869 + -2.3
2,448,933 + +0.3
2,449,183 + CSW01_11520 0.15 -2.9
2,449,336 + CSW01_11520 0.21 -0.7
2,449,428 - CSW01_11520 0.24 +0.3
2,449,452 - CSW01_11520 0.25 -0.0
2,449,536 - CSW01_11520 0.28 +0.3
2,449,596 + CSW01_11520 0.30 +1.8

Or see this region's nucleotide sequence