Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04835

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04830 and CSW01_04835 overlap by 8 nucleotidesCSW01_04835 and CSW01_04840 are separated by 178 nucleotidesCSW01_04840 and CSW01_04845 are separated by 147 nucleotides CSW01_04830: CSW01_04830 - lipoyl synthase, at 1,007,556 to 1,008,521 _04830 CSW01_04835: CSW01_04835 - lipoyl(octanoyl) transferase LipB, at 1,008,514 to 1,009,173 _04835 CSW01_04840: CSW01_04840 - hypothetical protein, at 1,009,352 to 1,009,630 _04840 CSW01_04845: CSW01_04845 - D-alanyl-D-alanine carboxypeptidase, at 1,009,778 to 1,010,953 _04845 Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -3 -2 -1 0 1at 1009.650 kb on - strandat 1009.671 kb on - strandat 1009.743 kb on + strandat 1009.761 kb on - strandat 1009.796 kb on - strandat 1009.860 kb on + strandat 1009.868 kb on + strandat 1009.977 kb on + strand, within CSW01_04845at 1010.095 kb on + strand, within CSW01_04845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
remove
1,009,650 - -0.1
1,009,671 - -0.2
1,009,743 + +0.0
1,009,761 - -0.2
1,009,796 - +0.1
1,009,860 + +0.9
1,009,868 + -3.7
1,009,977 + CSW01_04845 0.17 -0.3
1,010,095 + CSW01_04845 0.27 +1.2

Or see this region's nucleotide sequence