Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04605

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04595 and CSW01_04600 are separated by 29 nucleotidesCSW01_04600 and CSW01_04605 are separated by 38 nucleotidesCSW01_04605 and CSW01_04610 are separated by 204 nucleotides CSW01_04595: CSW01_04595 - DUF423 domain-containing protein, at 954,695 to 955,081 _04595 CSW01_04600: CSW01_04600 - flap endonuclease Xni, at 955,111 to 955,962 _04600 CSW01_04605: CSW01_04605 - LOG family protein, at 956,001 to 957,374 _04605 CSW01_04610: CSW01_04610 - GGDEF domain-containing protein, at 957,579 to 959,153 _04610 Position (kb) 956 957 958Strain fitness (log2 ratio) -1 0 1 2at 955.004 kb on - strand, within CSW01_04595at 955.038 kb on - strand, within CSW01_04595at 955.093 kb on + strandat 955.116 kb on - strandat 955.199 kb on - strand, within CSW01_04600at 955.199 kb on - strand, within CSW01_04600at 955.325 kb on - strand, within CSW01_04600at 955.330 kb on - strand, within CSW01_04600at 955.497 kb on - strand, within CSW01_04600at 955.538 kb on + strand, within CSW01_04600at 955.546 kb on - strand, within CSW01_04600at 955.695 kb on - strand, within CSW01_04600at 955.747 kb on + strand, within CSW01_04600at 955.750 kb on + strand, within CSW01_04600at 955.802 kb on + strand, within CSW01_04600at 955.802 kb on + strand, within CSW01_04600at 956.172 kb on - strand, within CSW01_04605at 956.186 kb on + strand, within CSW01_04605at 956.194 kb on - strand, within CSW01_04605at 956.207 kb on + strand, within CSW01_04605at 956.222 kb on + strand, within CSW01_04605at 956.380 kb on + strand, within CSW01_04605at 956.412 kb on - strand, within CSW01_04605at 956.421 kb on + strand, within CSW01_04605at 956.440 kb on + strand, within CSW01_04605at 956.498 kb on + strand, within CSW01_04605at 956.498 kb on + strand, within CSW01_04605at 956.684 kb on + strand, within CSW01_04605at 956.689 kb on + strand, within CSW01_04605at 956.689 kb on + strand, within CSW01_04605at 956.692 kb on - strand, within CSW01_04605at 956.697 kb on - strand, within CSW01_04605at 956.697 kb on - strand, within CSW01_04605at 956.737 kb on - strand, within CSW01_04605at 956.759 kb on + strand, within CSW01_04605at 956.821 kb on + strand, within CSW01_04605at 956.824 kb on - strand, within CSW01_04605at 956.826 kb on - strand, within CSW01_04605at 956.839 kb on + strand, within CSW01_04605at 956.877 kb on - strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.908 kb on - strand, within CSW01_04605at 956.908 kb on - strand, within CSW01_04605at 956.913 kb on - strand, within CSW01_04605at 956.988 kb on + strand, within CSW01_04605at 957.005 kb on + strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.047 kb on + strand, within CSW01_04605at 957.072 kb on - strand, within CSW01_04605at 957.111 kb on + strand, within CSW01_04605at 957.229 kb on + strand, within CSW01_04605at 957.229 kb on - strand, within CSW01_04605at 957.239 kb on + strandat 957.340 kb on + strandat 957.353 kb on - strandat 957.376 kb on - strandat 957.376 kb on - strandat 957.650 kb on - strandat 957.886 kb on + strand, within CSW01_04610at 957.911 kb on + strand, within CSW01_04610at 957.919 kb on - strand, within CSW01_04610at 958.016 kb on + strand, within CSW01_04610at 958.024 kb on - strand, within CSW01_04610at 958.039 kb on + strand, within CSW01_04610at 958.051 kb on + strand, within CSW01_04610at 958.125 kb on + strand, within CSW01_04610at 958.158 kb on - strand, within CSW01_04610at 958.169 kb on - strand, within CSW01_04610at 958.265 kb on - strand, within CSW01_04610at 958.289 kb on + strand, within CSW01_04610at 958.289 kb on + strand, within CSW01_04610at 958.297 kb on - strand, within CSW01_04610at 958.307 kb on - strand, within CSW01_04610

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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955,004 - CSW01_04595 0.80 +0.3
955,038 - CSW01_04595 0.89 -0.4
955,093 + +1.2
955,116 - +0.5
955,199 - CSW01_04600 0.10 -0.2
955,199 - CSW01_04600 0.10 -0.5
955,325 - CSW01_04600 0.25 +0.7
955,330 - CSW01_04600 0.26 +0.0
955,497 - CSW01_04600 0.45 +0.6
955,538 + CSW01_04600 0.50 -0.6
955,546 - CSW01_04600 0.51 +0.1
955,695 - CSW01_04600 0.69 +0.1
955,747 + CSW01_04600 0.75 -0.3
955,750 + CSW01_04600 0.75 +1.0
955,802 + CSW01_04600 0.81 -0.1
955,802 + CSW01_04600 0.81 -0.1
956,172 - CSW01_04605 0.12 +0.6
956,186 + CSW01_04605 0.13 -0.2
956,194 - CSW01_04605 0.14 +0.5
956,207 + CSW01_04605 0.15 +0.3
956,222 + CSW01_04605 0.16 +0.1
956,380 + CSW01_04605 0.28 -0.4
956,412 - CSW01_04605 0.30 +0.8
956,421 + CSW01_04605 0.31 -0.3
956,440 + CSW01_04605 0.32 -0.2
956,498 + CSW01_04605 0.36 +0.1
956,498 + CSW01_04605 0.36 +0.0
956,684 + CSW01_04605 0.50 -1.6
956,689 + CSW01_04605 0.50 +1.0
956,689 + CSW01_04605 0.50 -0.4
956,692 - CSW01_04605 0.50 -0.0
956,697 - CSW01_04605 0.51 +0.9
956,697 - CSW01_04605 0.51 +0.3
956,737 - CSW01_04605 0.54 +2.0
956,759 + CSW01_04605 0.55 -0.4
956,821 + CSW01_04605 0.60 +0.2
956,824 - CSW01_04605 0.60 -0.3
956,826 - CSW01_04605 0.60 +0.2
956,839 + CSW01_04605 0.61 +0.3
956,877 - CSW01_04605 0.64 +1.8
956,905 + CSW01_04605 0.66 +0.1
956,905 + CSW01_04605 0.66 +0.1
956,905 + CSW01_04605 0.66 -0.2
956,905 + CSW01_04605 0.66 +0.4
956,908 - CSW01_04605 0.66 +1.3
956,908 - CSW01_04605 0.66 -0.1
956,913 - CSW01_04605 0.66 +0.2
956,988 + CSW01_04605 0.72 -0.6
957,005 + CSW01_04605 0.73 +0.2
957,013 - CSW01_04605 0.74 +0.6
957,013 - CSW01_04605 0.74 +0.5
957,013 - CSW01_04605 0.74 +0.1
957,013 - CSW01_04605 0.74 -0.2
957,013 - CSW01_04605 0.74 +0.3
957,013 - CSW01_04605 0.74 +0.1
957,047 + CSW01_04605 0.76 +0.9
957,072 - CSW01_04605 0.78 -0.2
957,111 + CSW01_04605 0.81 +0.5
957,229 + CSW01_04605 0.89 +0.4
957,229 - CSW01_04605 0.89 +0.9
957,239 + +0.9
957,340 + +0.2
957,353 - -1.0
957,376 - +0.7
957,376 - +0.2
957,650 - -0.0
957,886 + CSW01_04610 0.19 +1.1
957,911 + CSW01_04610 0.21 -1.0
957,919 - CSW01_04610 0.22 -0.8
958,016 + CSW01_04610 0.28 +0.3
958,024 - CSW01_04610 0.28 +0.7
958,039 + CSW01_04610 0.29 -0.3
958,051 + CSW01_04610 0.30 +0.6
958,125 + CSW01_04610 0.35 -0.8
958,158 - CSW01_04610 0.37 +1.0
958,169 - CSW01_04610 0.37 -0.0
958,265 - CSW01_04610 0.44 +0.2
958,289 + CSW01_04610 0.45 +0.0
958,289 + CSW01_04610 0.45 -0.3
958,297 - CSW01_04610 0.46 +0.6
958,307 - CSW01_04610 0.46 -0.4

Or see this region's nucleotide sequence