Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04405

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04400 and CSW01_04405 are separated by 145 nucleotidesCSW01_04405 and CSW01_04410 are separated by 263 nucleotides CSW01_04400: CSW01_04400 - NAD(+) kinase, at 917,266 to 918,150 _04400 CSW01_04405: CSW01_04405 - nucleotide exchange factor GrpE, at 918,296 to 918,898 _04405 CSW01_04410: CSW01_04410 - molecular chaperone DnaK, at 919,162 to 921,069 _04410 Position (kb) 918 919Strain fitness (log2 ratio) -1 0 1at 918.261 kb on + strandat 918.261 kb on + strandat 918.279 kb on - strandat 918.909 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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918,261 + +0.3
918,261 + -0.7
918,279 - +0.2
918,909 - -0.7

Or see this region's nucleotide sequence