Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03620

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03615 and CSW01_03620 are separated by 105 nucleotidesCSW01_03620 and CSW01_03625 are separated by 26 nucleotidesCSW01_03625 and CSW01_03630 are separated by 9 nucleotides CSW01_03615: CSW01_03615 - anhydro-N-acetylmuramic acid kinase, at 737,400 to 738,512 _03615 CSW01_03620: CSW01_03620 - beta-hexosaminidase, at 738,618 to 739,610 _03620 CSW01_03625: CSW01_03625 - DNA-binding response regulator, at 739,637 to 740,350 _03625 CSW01_03630: CSW01_03630 - sensor histidine kinase, at 740,360 to 742,036 _03630 Position (kb) 738 739 740Strain fitness (log2 ratio) -2 -1 0 1 2at 737.642 kb on + strand, within CSW01_03615at 737.650 kb on - strand, within CSW01_03615at 737.709 kb on + strand, within CSW01_03615at 737.709 kb on + strand, within CSW01_03615at 737.709 kb on + strand, within CSW01_03615at 737.717 kb on - strand, within CSW01_03615at 737.833 kb on + strand, within CSW01_03615at 737.859 kb on + strand, within CSW01_03615at 737.867 kb on - strand, within CSW01_03615at 737.867 kb on - strand, within CSW01_03615at 737.937 kb on + strand, within CSW01_03615at 737.968 kb on + strand, within CSW01_03615at 737.970 kb on - strand, within CSW01_03615at 738.066 kb on + strand, within CSW01_03615at 738.074 kb on - strand, within CSW01_03615at 738.078 kb on + strand, within CSW01_03615at 738.078 kb on + strand, within CSW01_03615at 738.078 kb on + strand, within CSW01_03615at 738.145 kb on + strand, within CSW01_03615at 738.183 kb on - strand, within CSW01_03615at 738.199 kb on - strand, within CSW01_03615at 738.215 kb on + strand, within CSW01_03615at 738.237 kb on + strand, within CSW01_03615at 738.245 kb on - strand, within CSW01_03615at 738.264 kb on - strand, within CSW01_03615at 738.281 kb on + strand, within CSW01_03615at 738.289 kb on - strand, within CSW01_03615at 738.314 kb on + strand, within CSW01_03615at 738.394 kb on + strand, within CSW01_03615at 738.394 kb on + strand, within CSW01_03615at 738.402 kb on - strandat 738.424 kb on - strandat 738.489 kb on + strandat 738.497 kb on - strandat 738.535 kb on - strandat 738.631 kb on + strandat 738.639 kb on - strandat 738.639 kb on - strandat 738.685 kb on + strandat 738.685 kb on + strandat 738.690 kb on + strandat 738.693 kb on - strandat 738.727 kb on + strand, within CSW01_03620at 738.856 kb on - strand, within CSW01_03620at 738.863 kb on + strand, within CSW01_03620at 738.863 kb on + strand, within CSW01_03620at 738.863 kb on + strand, within CSW01_03620at 738.866 kb on - strand, within CSW01_03620at 738.870 kb on - strand, within CSW01_03620at 738.871 kb on - strand, within CSW01_03620at 738.871 kb on - strand, within CSW01_03620at 738.876 kb on + strand, within CSW01_03620at 738.886 kb on + strand, within CSW01_03620at 738.908 kb on - strand, within CSW01_03620at 738.908 kb on - strand, within CSW01_03620at 738.966 kb on + strand, within CSW01_03620at 738.978 kb on + strand, within CSW01_03620at 739.046 kb on - strand, within CSW01_03620at 739.091 kb on + strand, within CSW01_03620at 739.168 kb on - strand, within CSW01_03620at 739.213 kb on - strand, within CSW01_03620at 739.284 kb on - strand, within CSW01_03620at 739.296 kb on - strand, within CSW01_03620at 739.401 kb on + strand, within CSW01_03620at 739.474 kb on - strand, within CSW01_03620at 739.498 kb on + strand, within CSW01_03620at 739.554 kb on - strandat 739.636 kb on - strandat 739.674 kb on - strandat 739.693 kb on + strandat 739.694 kb on + strandat 739.694 kb on + strandat 739.702 kb on - strandat 739.770 kb on + strand, within CSW01_03625at 739.918 kb on + strand, within CSW01_03625at 739.928 kb on + strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.936 kb on - strand, within CSW01_03625at 739.946 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.951 kb on + strand, within CSW01_03625at 739.956 kb on + strand, within CSW01_03625at 739.956 kb on + strand, within CSW01_03625at 739.959 kb on - strand, within CSW01_03625at 739.959 kb on - strand, within CSW01_03625at 739.962 kb on + strand, within CSW01_03625at 739.972 kb on + strand, within CSW01_03625at 739.975 kb on - strand, within CSW01_03625at 740.046 kb on + strand, within CSW01_03625at 740.046 kb on + strand, within CSW01_03625at 740.054 kb on - strand, within CSW01_03625at 740.074 kb on + strand, within CSW01_03625at 740.111 kb on + strand, within CSW01_03625at 740.122 kb on + strand, within CSW01_03625at 740.129 kb on - strand, within CSW01_03625at 740.130 kb on - strand, within CSW01_03625at 740.135 kb on - strand, within CSW01_03625at 740.216 kb on - strand, within CSW01_03625at 740.216 kb on - strand, within CSW01_03625at 740.312 kb on + strandat 740.320 kb on - strandat 740.341 kb on - strandat 740.348 kb on + strandat 740.351 kb on + strandat 740.415 kb on - strandat 740.418 kb on + strandat 740.418 kb on + strandat 740.426 kb on - strandat 740.431 kb on + strandat 740.571 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.602 kb on + strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630at 740.610 kb on - strand, within CSW01_03630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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737,642 + CSW01_03615 0.22 -0.3
737,650 - CSW01_03615 0.22 +0.1
737,709 + CSW01_03615 0.28 -0.0
737,709 + CSW01_03615 0.28 -0.4
737,709 + CSW01_03615 0.28 -0.5
737,717 - CSW01_03615 0.28 -0.2
737,833 + CSW01_03615 0.39 +1.1
737,859 + CSW01_03615 0.41 -0.2
737,867 - CSW01_03615 0.42 +0.1
737,867 - CSW01_03615 0.42 +0.3
737,937 + CSW01_03615 0.48 +0.7
737,968 + CSW01_03615 0.51 +1.6
737,970 - CSW01_03615 0.51 +0.6
738,066 + CSW01_03615 0.60 -0.0
738,074 - CSW01_03615 0.61 +2.3
738,078 + CSW01_03615 0.61 -0.7
738,078 + CSW01_03615 0.61 +1.3
738,078 + CSW01_03615 0.61 +0.5
738,145 + CSW01_03615 0.67 +0.3
738,183 - CSW01_03615 0.70 +0.7
738,199 - CSW01_03615 0.72 +0.6
738,215 + CSW01_03615 0.73 -0.4
738,237 + CSW01_03615 0.75 +0.6
738,245 - CSW01_03615 0.76 +0.7
738,264 - CSW01_03615 0.78 +0.7
738,281 + CSW01_03615 0.79 -1.2
738,289 - CSW01_03615 0.80 +0.9
738,314 + CSW01_03615 0.82 +0.0
738,394 + CSW01_03615 0.89 +0.2
738,394 + CSW01_03615 0.89 +0.2
738,402 - +0.2
738,424 - +0.7
738,489 + -0.2
738,497 - +0.9
738,535 - +0.9
738,631 + +0.2
738,639 - -0.3
738,639 - +0.2
738,685 + -0.2
738,685 + -0.1
738,690 + +0.5
738,693 - -0.0
738,727 + CSW01_03620 0.11 +0.3
738,856 - CSW01_03620 0.24 +0.2
738,863 + CSW01_03620 0.25 +0.3
738,863 + CSW01_03620 0.25 +1.5
738,863 + CSW01_03620 0.25 -1.2
738,866 - CSW01_03620 0.25 +0.3
738,870 - CSW01_03620 0.25 +0.0
738,871 - CSW01_03620 0.25 +1.1
738,871 - CSW01_03620 0.25 +0.7
738,876 + CSW01_03620 0.26 +0.1
738,886 + CSW01_03620 0.27 +0.5
738,908 - CSW01_03620 0.29 -0.6
738,908 - CSW01_03620 0.29 -0.6
738,966 + CSW01_03620 0.35 +0.6
738,978 + CSW01_03620 0.36 +1.9
739,046 - CSW01_03620 0.43 +0.7
739,091 + CSW01_03620 0.48 -0.8
739,168 - CSW01_03620 0.55 -0.3
739,213 - CSW01_03620 0.60 -0.4
739,284 - CSW01_03620 0.67 +0.1
739,296 - CSW01_03620 0.68 +0.4
739,401 + CSW01_03620 0.79 +0.8
739,474 - CSW01_03620 0.86 -0.0
739,498 + CSW01_03620 0.89 -0.8
739,554 - -0.7
739,636 - +0.2
739,674 - +0.6
739,693 + +0.7
739,694 + -0.4
739,694 + -0.8
739,702 - +0.1
739,770 + CSW01_03625 0.19 +0.6
739,918 + CSW01_03625 0.39 +0.6
739,928 + CSW01_03625 0.41 -0.4
739,936 - CSW01_03625 0.42 -0.7
739,936 - CSW01_03625 0.42 -1.0
739,936 - CSW01_03625 0.42 +0.3
739,936 - CSW01_03625 0.42 -0.4
739,936 - CSW01_03625 0.42 -0.2
739,936 - CSW01_03625 0.42 -0.3
739,946 + CSW01_03625 0.43 +0.4
739,951 + CSW01_03625 0.44 +2.1
739,951 + CSW01_03625 0.44 +0.3
739,951 + CSW01_03625 0.44 +0.3
739,951 + CSW01_03625 0.44 -0.0
739,951 + CSW01_03625 0.44 +0.4
739,956 + CSW01_03625 0.45 -0.1
739,956 + CSW01_03625 0.45 +0.0
739,959 - CSW01_03625 0.45 +0.5
739,959 - CSW01_03625 0.45 +0.4
739,962 + CSW01_03625 0.46 +0.4
739,972 + CSW01_03625 0.47 -0.4
739,975 - CSW01_03625 0.47 +1.0
740,046 + CSW01_03625 0.57 +0.1
740,046 + CSW01_03625 0.57 +0.2
740,054 - CSW01_03625 0.58 +0.6
740,074 + CSW01_03625 0.61 +0.3
740,111 + CSW01_03625 0.66 +0.5
740,122 + CSW01_03625 0.68 -0.1
740,129 - CSW01_03625 0.69 +0.1
740,130 - CSW01_03625 0.69 +0.4
740,135 - CSW01_03625 0.70 -0.1
740,216 - CSW01_03625 0.81 -0.2
740,216 - CSW01_03625 0.81 +1.7
740,312 + +0.2
740,320 - +0.7
740,341 - -0.2
740,348 + +0.9
740,351 + +0.3
740,415 - -0.4
740,418 + +0.7
740,418 + -0.0
740,426 - +0.1
740,431 + +0.4
740,571 + CSW01_03630 0.13 +0.8
740,602 + CSW01_03630 0.14 -0.5
740,602 + CSW01_03630 0.14 +0.1
740,602 + CSW01_03630 0.14 -0.0
740,602 + CSW01_03630 0.14 +0.4
740,602 + CSW01_03630 0.14 -0.0
740,602 + CSW01_03630 0.14 +0.2
740,610 - CSW01_03630 0.15 +0.2
740,610 - CSW01_03630 0.15 -2.5
740,610 - CSW01_03630 0.15 -0.1
740,610 - CSW01_03630 0.15 +0.1
740,610 - CSW01_03630 0.15 +0.4
740,610 - CSW01_03630 0.15 +1.0
740,610 - CSW01_03630 0.15 +0.7
740,610 - CSW01_03630 0.15 +0.7
740,610 - CSW01_03630 0.15 -0.5

Or see this region's nucleotide sequence