Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03615

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03605 and CSW01_03610 are separated by 23 nucleotidesCSW01_03610 and CSW01_03615 are separated by 17 nucleotidesCSW01_03615 and CSW01_03620 are separated by 105 nucleotides CSW01_03605: CSW01_03605 - sodium:proton antiporter, at 734,636 to 736,435 _03605 CSW01_03610: CSW01_03610 - N-acetylmuramic acid 6-phosphate etherase, at 736,459 to 737,382 _03610 CSW01_03615: CSW01_03615 - anhydro-N-acetylmuramic acid kinase, at 737,400 to 738,512 _03615 CSW01_03620: CSW01_03620 - beta-hexosaminidase, at 738,618 to 739,610 _03620 Position (kb) 737 738 739Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 736.448 kb on + strandat 736.481 kb on - strandat 736.496 kb on - strandat 736.535 kb on - strandat 736.560 kb on - strand, within CSW01_03610at 736.574 kb on - strand, within CSW01_03610at 736.713 kb on - strand, within CSW01_03610at 736.713 kb on - strand, within CSW01_03610at 736.756 kb on + strand, within CSW01_03610at 736.764 kb on - strand, within CSW01_03610at 736.764 kb on - strand, within CSW01_03610at 736.764 kb on - strand, within CSW01_03610at 736.880 kb on - strand, within CSW01_03610at 736.880 kb on - strand, within CSW01_03610at 736.921 kb on + strand, within CSW01_03610at 736.921 kb on + strand, within CSW01_03610at 736.921 kb on + strand, within CSW01_03610at 736.929 kb on - strand, within CSW01_03610at 736.929 kb on - strand, within CSW01_03610at 736.929 kb on - strand, within CSW01_03610at 736.944 kb on + strand, within CSW01_03610at 736.970 kb on - strand, within CSW01_03610at 736.989 kb on + strand, within CSW01_03610at 737.015 kb on - strand, within CSW01_03610at 737.094 kb on + strand, within CSW01_03610at 737.094 kb on + strand, within CSW01_03610at 737.102 kb on - strand, within CSW01_03610at 737.102 kb on - strand, within CSW01_03610at 737.120 kb on - strand, within CSW01_03610at 737.131 kb on + strand, within CSW01_03610at 737.154 kb on + strand, within CSW01_03610at 737.167 kb on - strand, within CSW01_03610at 737.250 kb on - strand, within CSW01_03610at 737.299 kb on + strandat 737.326 kb on + strandat 737.523 kb on - strand, within CSW01_03615at 737.549 kb on - strand, within CSW01_03615at 737.615 kb on - strand, within CSW01_03615at 737.642 kb on + strand, within CSW01_03615at 737.650 kb on - strand, within CSW01_03615at 737.709 kb on + strand, within CSW01_03615at 737.709 kb on + strand, within CSW01_03615at 737.709 kb on + strand, within CSW01_03615at 737.717 kb on - strand, within CSW01_03615at 737.833 kb on + strand, within CSW01_03615at 737.859 kb on + strand, within CSW01_03615at 737.867 kb on - strand, within CSW01_03615at 737.867 kb on - strand, within CSW01_03615at 737.937 kb on + strand, within CSW01_03615at 737.968 kb on + strand, within CSW01_03615at 737.970 kb on - strand, within CSW01_03615at 738.066 kb on + strand, within CSW01_03615at 738.074 kb on - strand, within CSW01_03615at 738.078 kb on + strand, within CSW01_03615at 738.078 kb on + strand, within CSW01_03615at 738.078 kb on + strand, within CSW01_03615at 738.145 kb on + strand, within CSW01_03615at 738.183 kb on - strand, within CSW01_03615at 738.199 kb on - strand, within CSW01_03615at 738.215 kb on + strand, within CSW01_03615at 738.237 kb on + strand, within CSW01_03615at 738.245 kb on - strand, within CSW01_03615at 738.264 kb on - strand, within CSW01_03615at 738.281 kb on + strand, within CSW01_03615at 738.289 kb on - strand, within CSW01_03615at 738.314 kb on + strand, within CSW01_03615at 738.394 kb on + strand, within CSW01_03615at 738.394 kb on + strand, within CSW01_03615at 738.402 kb on - strandat 738.424 kb on - strandat 738.489 kb on + strandat 738.497 kb on - strandat 738.535 kb on - strandat 738.631 kb on + strandat 738.639 kb on - strandat 738.639 kb on - strandat 738.685 kb on + strandat 738.685 kb on + strandat 738.690 kb on + strandat 738.693 kb on - strandat 738.727 kb on + strand, within CSW01_03620at 738.856 kb on - strand, within CSW01_03620at 738.863 kb on + strand, within CSW01_03620at 738.863 kb on + strand, within CSW01_03620at 738.863 kb on + strand, within CSW01_03620at 738.866 kb on - strand, within CSW01_03620at 738.870 kb on - strand, within CSW01_03620at 738.871 kb on - strand, within CSW01_03620at 738.871 kb on - strand, within CSW01_03620at 738.876 kb on + strand, within CSW01_03620at 738.886 kb on + strand, within CSW01_03620at 738.908 kb on - strand, within CSW01_03620at 738.908 kb on - strand, within CSW01_03620at 738.966 kb on + strand, within CSW01_03620at 738.978 kb on + strand, within CSW01_03620at 739.046 kb on - strand, within CSW01_03620at 739.091 kb on + strand, within CSW01_03620at 739.168 kb on - strand, within CSW01_03620at 739.213 kb on - strand, within CSW01_03620at 739.284 kb on - strand, within CSW01_03620at 739.296 kb on - strand, within CSW01_03620at 739.401 kb on + strand, within CSW01_03620at 739.474 kb on - strand, within CSW01_03620at 739.498 kb on + strand, within CSW01_03620

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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736,448 + +0.2
736,481 - +2.1
736,496 - -1.3
736,535 - +0.3
736,560 - CSW01_03610 0.11 +0.4
736,574 - CSW01_03610 0.12 -0.2
736,713 - CSW01_03610 0.27 -0.7
736,713 - CSW01_03610 0.27 +0.3
736,756 + CSW01_03610 0.32 +0.6
736,764 - CSW01_03610 0.33 -0.3
736,764 - CSW01_03610 0.33 +0.3
736,764 - CSW01_03610 0.33 +0.9
736,880 - CSW01_03610 0.46 -2.0
736,880 - CSW01_03610 0.46 +0.7
736,921 + CSW01_03610 0.50 +3.5
736,921 + CSW01_03610 0.50 -0.2
736,921 + CSW01_03610 0.50 +2.3
736,929 - CSW01_03610 0.51 -0.1
736,929 - CSW01_03610 0.51 +1.9
736,929 - CSW01_03610 0.51 -0.3
736,944 + CSW01_03610 0.52 +0.3
736,970 - CSW01_03610 0.55 -0.2
736,989 + CSW01_03610 0.57 +0.5
737,015 - CSW01_03610 0.60 +0.5
737,094 + CSW01_03610 0.69 +0.4
737,094 + CSW01_03610 0.69 +0.7
737,102 - CSW01_03610 0.70 +0.3
737,102 - CSW01_03610 0.70 +0.0
737,120 - CSW01_03610 0.72 +0.5
737,131 + CSW01_03610 0.73 +1.2
737,154 + CSW01_03610 0.75 +0.2
737,167 - CSW01_03610 0.77 -2.8
737,250 - CSW01_03610 0.86 +0.4
737,299 + -0.1
737,326 + +0.7
737,523 - CSW01_03615 0.11 +0.0
737,549 - CSW01_03615 0.13 -0.9
737,615 - CSW01_03615 0.19 +0.3
737,642 + CSW01_03615 0.22 -0.3
737,650 - CSW01_03615 0.22 +0.1
737,709 + CSW01_03615 0.28 -0.0
737,709 + CSW01_03615 0.28 -0.4
737,709 + CSW01_03615 0.28 -0.5
737,717 - CSW01_03615 0.28 -0.2
737,833 + CSW01_03615 0.39 +1.1
737,859 + CSW01_03615 0.41 -0.2
737,867 - CSW01_03615 0.42 +0.1
737,867 - CSW01_03615 0.42 +0.3
737,937 + CSW01_03615 0.48 +0.7
737,968 + CSW01_03615 0.51 +1.6
737,970 - CSW01_03615 0.51 +0.6
738,066 + CSW01_03615 0.60 -0.0
738,074 - CSW01_03615 0.61 +2.3
738,078 + CSW01_03615 0.61 -0.7
738,078 + CSW01_03615 0.61 +1.3
738,078 + CSW01_03615 0.61 +0.5
738,145 + CSW01_03615 0.67 +0.3
738,183 - CSW01_03615 0.70 +0.7
738,199 - CSW01_03615 0.72 +0.6
738,215 + CSW01_03615 0.73 -0.4
738,237 + CSW01_03615 0.75 +0.6
738,245 - CSW01_03615 0.76 +0.7
738,264 - CSW01_03615 0.78 +0.7
738,281 + CSW01_03615 0.79 -1.2
738,289 - CSW01_03615 0.80 +0.9
738,314 + CSW01_03615 0.82 +0.0
738,394 + CSW01_03615 0.89 +0.2
738,394 + CSW01_03615 0.89 +0.2
738,402 - +0.2
738,424 - +0.7
738,489 + -0.2
738,497 - +0.9
738,535 - +0.9
738,631 + +0.2
738,639 - -0.3
738,639 - +0.2
738,685 + -0.2
738,685 + -0.1
738,690 + +0.5
738,693 - -0.0
738,727 + CSW01_03620 0.11 +0.3
738,856 - CSW01_03620 0.24 +0.2
738,863 + CSW01_03620 0.25 +0.3
738,863 + CSW01_03620 0.25 +1.5
738,863 + CSW01_03620 0.25 -1.2
738,866 - CSW01_03620 0.25 +0.3
738,870 - CSW01_03620 0.25 +0.0
738,871 - CSW01_03620 0.25 +1.1
738,871 - CSW01_03620 0.25 +0.7
738,876 + CSW01_03620 0.26 +0.1
738,886 + CSW01_03620 0.27 +0.5
738,908 - CSW01_03620 0.29 -0.6
738,908 - CSW01_03620 0.29 -0.6
738,966 + CSW01_03620 0.35 +0.6
738,978 + CSW01_03620 0.36 +1.9
739,046 - CSW01_03620 0.43 +0.7
739,091 + CSW01_03620 0.48 -0.8
739,168 - CSW01_03620 0.55 -0.3
739,213 - CSW01_03620 0.60 -0.4
739,284 - CSW01_03620 0.67 +0.1
739,296 - CSW01_03620 0.68 +0.4
739,401 + CSW01_03620 0.79 +0.8
739,474 - CSW01_03620 0.86 -0.0
739,498 + CSW01_03620 0.89 -0.8

Or see this region's nucleotide sequence