Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03515 and CSW01_03520 are separated by 567 nucleotides CSW01_03520 and CSW01_03525 are separated by 2 nucleotides
CSW01_03515: CSW01_03515 - DNA mismatch repair protein MutH, at 714,591 to 715,256
_03515
CSW01_03520: CSW01_03520 - RNA pyrophosphohydrolase, at 715,824 to 716,405
_03520
CSW01_03525: CSW01_03525 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 716,408 to 718,654
_03525
Position (kb) 715
716
717 Strain fitness (log2 ratio) -2
-1
0
1 at 714.848 kb on + strand, within CSW01_03515 at 714.856 kb on - strand, within CSW01_03515 at 714.856 kb on - strand, within CSW01_03515 at 714.907 kb on + strand, within CSW01_03515 at 714.924 kb on - strand, within CSW01_03515 at 714.953 kb on + strand, within CSW01_03515 at 714.960 kb on + strand, within CSW01_03515 at 714.975 kb on + strand, within CSW01_03515 at 714.983 kb on - strand, within CSW01_03515 at 715.038 kb on + strand, within CSW01_03515 at 715.046 kb on - strand, within CSW01_03515 at 715.145 kb on + strand, within CSW01_03515 at 715.153 kb on - strand, within CSW01_03515 at 715.153 kb on - strand, within CSW01_03515 at 715.158 kb on + strand, within CSW01_03515 at 715.166 kb on - strand, within CSW01_03515 at 715.199 kb on - strand at 715.289 kb on - strand at 715.320 kb on - strand at 715.358 kb on + strand at 715.402 kb on - strand at 715.440 kb on + strand at 715.491 kb on + strand at 715.491 kb on + strand at 715.491 kb on + strand at 715.821 kb on + strand at 715.821 kb on + strand at 716.064 kb on - strand, within CSW01_03520 at 716.271 kb on - strand, within CSW01_03520 at 716.400 kb on + strand at 716.400 kb on + strand at 716.400 kb on + strand at 716.408 kb on - strand at 716.408 kb on - strand at 716.419 kb on + strand at 716.433 kb on - strand at 716.433 kb on - strand at 716.494 kb on - strand at 716.514 kb on - strand at 716.515 kb on + strand at 716.515 kb on + strand at 716.515 kb on + strand at 716.515 kb on + strand at 716.515 kb on + strand at 716.515 kb on + strand at 716.515 kb on + strand at 716.515 kb on + strand at 716.516 kb on - strand at 716.517 kb on + strand at 716.520 kb on + strand at 716.520 kb on + strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.523 kb on - strand at 716.528 kb on - strand at 716.551 kb on - strand at 716.584 kb on + strand at 716.592 kb on - strand at 716.656 kb on + strand, within CSW01_03525 at 716.656 kb on + strand, within CSW01_03525 at 716.672 kb on + strand, within CSW01_03525 at 716.752 kb on - strand, within CSW01_03525 at 716.780 kb on - strand, within CSW01_03525 at 716.834 kb on - strand, within CSW01_03525 at 716.937 kb on + strand, within CSW01_03525 at 716.967 kb on - strand, within CSW01_03525 at 717.011 kb on + strand, within CSW01_03525 at 717.014 kb on - strand, within CSW01_03525 at 717.019 kb on - strand, within CSW01_03525 at 717.159 kb on + strand, within CSW01_03525 at 717.159 kb on + strand, within CSW01_03525 at 717.159 kb on + strand, within CSW01_03525 at 717.159 kb on + strand, within CSW01_03525 at 717.167 kb on - strand, within CSW01_03525 at 717.167 kb on - strand, within CSW01_03525 at 717.167 kb on - strand, within CSW01_03525 at 717.167 kb on - strand, within CSW01_03525 at 717.272 kb on - strand, within CSW01_03525 at 717.288 kb on - strand, within CSW01_03525
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A remove 714,848 + CSW01_03515 0.39 +1.1 714,856 - CSW01_03515 0.40 -0.1 714,856 - CSW01_03515 0.40 -0.1 714,907 + CSW01_03515 0.47 -0.2 714,924 - CSW01_03515 0.50 +1.0 714,953 + CSW01_03515 0.54 -0.7 714,960 + CSW01_03515 0.55 +0.3 714,975 + CSW01_03515 0.58 -0.0 714,983 - CSW01_03515 0.59 +0.0 715,038 + CSW01_03515 0.67 +0.0 715,046 - CSW01_03515 0.68 -0.6 715,145 + CSW01_03515 0.83 +0.6 715,153 - CSW01_03515 0.84 -0.7 715,153 - CSW01_03515 0.84 -0.4 715,158 + CSW01_03515 0.85 +0.0 715,166 - CSW01_03515 0.86 +0.2 715,199 - +0.5 715,289 - +1.2 715,320 - +0.3 715,358 + +0.1 715,402 - -0.2 715,440 + +0.8 715,491 + +1.6 715,491 + -0.1 715,491 + -0.1 715,821 + +0.4 715,821 + -0.4 716,064 - CSW01_03520 0.41 -2.5 716,271 - CSW01_03520 0.77 -0.3 716,400 + -0.2 716,400 + +0.3 716,400 + +0.6 716,408 - +0.0 716,408 - -0.2 716,419 + +1.5 716,433 - +0.3 716,433 - +0.7 716,494 - +0.3 716,514 - -1.0 716,515 + +0.1 716,515 + -0.0 716,515 + +0.4 716,515 + +0.2 716,515 + -0.1 716,515 + +0.1 716,515 + +0.8 716,515 + +0.3 716,516 - -0.9 716,517 + +0.4 716,520 + -0.2 716,520 + -0.3 716,523 - +0.4 716,523 - +0.6 716,523 - +0.5 716,523 - +0.2 716,523 - +0.3 716,523 - -0.3 716,523 - +0.5 716,523 - +0.5 716,523 - +0.5 716,523 - +0.1 716,523 - +0.1 716,528 - +0.8 716,551 - +0.4 716,584 + +1.1 716,592 - +0.5 716,656 + CSW01_03525 0.11 +0.1 716,656 + CSW01_03525 0.11 +0.7 716,672 + CSW01_03525 0.12 +0.2 716,752 - CSW01_03525 0.15 -0.7 716,780 - CSW01_03525 0.17 +0.9 716,834 - CSW01_03525 0.19 +0.4 716,937 + CSW01_03525 0.24 +0.6 716,967 - CSW01_03525 0.25 +0.7 717,011 + CSW01_03525 0.27 +0.6 717,014 - CSW01_03525 0.27 +1.4 717,019 - CSW01_03525 0.27 +0.1 717,159 + CSW01_03525 0.33 +0.3 717,159 + CSW01_03525 0.33 -0.4 717,159 + CSW01_03525 0.33 -0.9 717,159 + CSW01_03525 0.33 +1.3 717,167 - CSW01_03525 0.34 +0.3 717,167 - CSW01_03525 0.34 +0.3 717,167 - CSW01_03525 0.34 -0.8 717,167 - CSW01_03525 0.34 -0.6 717,272 - CSW01_03525 0.38 -0.2 717,288 - CSW01_03525 0.39 +0.5
Or see this region's nucleotide sequence