Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03300

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03290 and CSW01_03295 are separated by 283 nucleotidesCSW01_03295 and CSW01_03300 are separated by 97 nucleotidesCSW01_03300 and CSW01_03305 are separated by 10 nucleotides CSW01_03290: CSW01_03290 - glutamate-1-semialdehyde 2,1-aminomutase, at 663,009 to 664,307 _03290 CSW01_03295: CSW01_03295 - iron-sulfur cluster insertion protein ErpA, at 664,591 to 664,932 _03295 CSW01_03300: CSW01_03300 - efflux RND transporter periplasmic adaptor subunit, at 665,030 to 666,130 _03300 CSW01_03305: CSW01_03305 - AcrB/AcrD/AcrF family protein, at 666,141 to 669,260 _03305 Position (kb) 665 666 667Strain fitness (log2 ratio) -2 -1 0 1 2 3at 664.474 kb on - strandat 664.474 kb on - strandat 664.986 kb on - strandat 665.054 kb on + strandat 665.127 kb on + strandat 665.132 kb on + strandat 665.135 kb on - strandat 665.140 kb on - strand, within CSW01_03300at 665.140 kb on - strand, within CSW01_03300at 665.248 kb on + strand, within CSW01_03300at 665.451 kb on - strand, within CSW01_03300at 665.451 kb on - strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.527 kb on + strand, within CSW01_03300at 665.532 kb on + strand, within CSW01_03300at 665.532 kb on + strand, within CSW01_03300at 665.532 kb on + strand, within CSW01_03300at 665.535 kb on - strand, within CSW01_03300at 665.535 kb on - strand, within CSW01_03300at 665.537 kb on + strand, within CSW01_03300at 665.537 kb on + strand, within CSW01_03300at 665.537 kb on + strand, within CSW01_03300at 665.540 kb on - strand, within CSW01_03300at 665.540 kb on - strand, within CSW01_03300at 665.545 kb on - strand, within CSW01_03300at 665.595 kb on - strand, within CSW01_03300at 665.601 kb on - strand, within CSW01_03300at 665.698 kb on + strand, within CSW01_03300at 665.785 kb on - strand, within CSW01_03300at 665.873 kb on - strand, within CSW01_03300at 665.881 kb on - strand, within CSW01_03300at 665.884 kb on - strand, within CSW01_03300at 665.890 kb on + strand, within CSW01_03300at 665.977 kb on + strand, within CSW01_03300at 665.977 kb on + strand, within CSW01_03300at 665.977 kb on + strand, within CSW01_03300at 665.985 kb on - strand, within CSW01_03300at 666.001 kb on + strand, within CSW01_03300at 666.082 kb on - strandat 666.105 kb on + strandat 666.115 kb on - strandat 666.115 kb on - strandat 666.115 kb on - strandat 666.115 kb on - strandat 666.162 kb on + strandat 666.167 kb on + strandat 666.183 kb on + strandat 666.190 kb on + strandat 666.190 kb on + strandat 666.191 kb on - strandat 666.191 kb on - strandat 666.325 kb on + strandat 666.333 kb on - strandat 666.369 kb on - strandat 666.369 kb on - strandat 666.417 kb on + strandat 666.417 kb on - strandat 666.511 kb on + strand, within CSW01_03305at 666.511 kb on + strand, within CSW01_03305at 666.519 kb on - strand, within CSW01_03305at 666.544 kb on + strand, within CSW01_03305at 666.558 kb on + strand, within CSW01_03305at 666.567 kb on + strand, within CSW01_03305at 666.572 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.580 kb on + strand, within CSW01_03305at 666.583 kb on - strand, within CSW01_03305at 666.588 kb on - strand, within CSW01_03305at 666.590 kb on + strand, within CSW01_03305at 666.593 kb on + strand, within CSW01_03305at 666.593 kb on - strand, within CSW01_03305at 666.593 kb on - strand, within CSW01_03305at 666.593 kb on - strand, within CSW01_03305at 666.724 kb on + strand, within CSW01_03305at 666.724 kb on + strand, within CSW01_03305at 666.732 kb on - strand, within CSW01_03305at 666.732 kb on - strand, within CSW01_03305at 666.752 kb on - strand, within CSW01_03305at 666.839 kb on + strand, within CSW01_03305at 666.859 kb on + strand, within CSW01_03305at 666.859 kb on + strand, within CSW01_03305at 666.864 kb on - strand, within CSW01_03305at 667.024 kb on + strand, within CSW01_03305at 667.032 kb on - strand, within CSW01_03305at 667.032 kb on - strand, within CSW01_03305at 667.042 kb on - strand, within CSW01_03305at 667.042 kb on - strand, within CSW01_03305at 667.042 kb on - strand, within CSW01_03305at 667.044 kb on + strand, within CSW01_03305at 667.051 kb on - strand, within CSW01_03305at 667.056 kb on + strand, within CSW01_03305at 667.064 kb on - strand, within CSW01_03305at 667.064 kb on - strand, within CSW01_03305at 667.064 kb on - strand, within CSW01_03305at 667.111 kb on + strand, within CSW01_03305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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664,474 - +1.0
664,474 - -0.1
664,986 - -0.1
665,054 + +0.1
665,127 + +0.5
665,132 + +0.3
665,135 - -0.4
665,140 - CSW01_03300 0.10 +0.7
665,140 - CSW01_03300 0.10 +0.4
665,248 + CSW01_03300 0.20 +0.7
665,451 - CSW01_03300 0.38 -0.1
665,451 - CSW01_03300 0.38 +0.3
665,527 + CSW01_03300 0.45 +0.5
665,527 + CSW01_03300 0.45 +0.2
665,527 + CSW01_03300 0.45 -0.4
665,527 + CSW01_03300 0.45 +0.5
665,532 + CSW01_03300 0.46 +0.0
665,532 + CSW01_03300 0.46 +0.5
665,532 + CSW01_03300 0.46 +2.9
665,535 - CSW01_03300 0.46 -0.4
665,535 - CSW01_03300 0.46 +1.1
665,537 + CSW01_03300 0.46 +0.3
665,537 + CSW01_03300 0.46 -0.0
665,537 + CSW01_03300 0.46 +0.4
665,540 - CSW01_03300 0.46 -0.2
665,540 - CSW01_03300 0.46 +0.3
665,545 - CSW01_03300 0.47 +0.2
665,595 - CSW01_03300 0.51 +0.2
665,601 - CSW01_03300 0.52 -0.1
665,698 + CSW01_03300 0.61 -0.1
665,785 - CSW01_03300 0.69 +0.3
665,873 - CSW01_03300 0.77 +0.1
665,881 - CSW01_03300 0.77 +0.9
665,884 - CSW01_03300 0.78 +0.0
665,890 + CSW01_03300 0.78 -0.8
665,977 + CSW01_03300 0.86 -1.0
665,977 + CSW01_03300 0.86 +0.1
665,977 + CSW01_03300 0.86 -0.0
665,985 - CSW01_03300 0.87 +1.2
666,001 + CSW01_03300 0.88 +0.6
666,082 - +0.3
666,105 + +0.6
666,115 - +1.7
666,115 - +0.8
666,115 - -0.2
666,115 - -0.5
666,162 + +0.5
666,167 + +0.7
666,183 + -0.3
666,190 + +0.2
666,190 + -0.4
666,191 - +0.9
666,191 - -0.1
666,325 + +0.0
666,333 - -0.8
666,369 - +0.3
666,369 - -0.0
666,417 + -0.7
666,417 - +0.9
666,511 + CSW01_03305 0.12 +1.0
666,511 + CSW01_03305 0.12 +0.3
666,519 - CSW01_03305 0.12 -1.8
666,544 + CSW01_03305 0.13 -1.2
666,558 + CSW01_03305 0.13 +0.8
666,567 + CSW01_03305 0.14 +0.1
666,572 + CSW01_03305 0.14 +1.6
666,580 + CSW01_03305 0.14 +0.9
666,580 + CSW01_03305 0.14 -1.0
666,580 + CSW01_03305 0.14 +0.3
666,580 + CSW01_03305 0.14 +1.0
666,583 - CSW01_03305 0.14 -0.2
666,588 - CSW01_03305 0.14 +0.0
666,590 + CSW01_03305 0.14 +0.2
666,593 + CSW01_03305 0.14 +0.2
666,593 - CSW01_03305 0.14 -0.8
666,593 - CSW01_03305 0.14 +0.0
666,593 - CSW01_03305 0.14 +0.0
666,724 + CSW01_03305 0.19 -0.1
666,724 + CSW01_03305 0.19 -1.3
666,732 - CSW01_03305 0.19 +1.5
666,732 - CSW01_03305 0.19 +0.3
666,752 - CSW01_03305 0.20 +0.2
666,839 + CSW01_03305 0.22 +0.9
666,859 + CSW01_03305 0.23 -0.3
666,859 + CSW01_03305 0.23 -0.1
666,864 - CSW01_03305 0.23 -0.4
667,024 + CSW01_03305 0.28 -0.4
667,032 - CSW01_03305 0.29 -0.2
667,032 - CSW01_03305 0.29 +0.6
667,042 - CSW01_03305 0.29 +0.3
667,042 - CSW01_03305 0.29 +0.4
667,042 - CSW01_03305 0.29 +0.4
667,044 + CSW01_03305 0.29 -0.4
667,051 - CSW01_03305 0.29 +0.2
667,056 + CSW01_03305 0.29 -0.3
667,064 - CSW01_03305 0.30 -0.8
667,064 - CSW01_03305 0.30 -0.6
667,064 - CSW01_03305 0.30 +0.1
667,111 + CSW01_03305 0.31 -0.0

Or see this region's nucleotide sequence