Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03265

Experiment: LB_0.5%bileacids_aerobic_180MIN_ZN15A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03260 and CSW01_03265 are separated by 169 nucleotidesCSW01_03265 and CSW01_03270 are separated by 572 nucleotidesCSW01_03270 and CSW01_03275 overlap by 52 nucleotides CSW01_03260: CSW01_03260 - ABC transporter permease, at 653,241 to 654,227 _03260 CSW01_03265: CSW01_03265 - peptide ABC transporter substrate-binding protein, at 654,397 to 656,067 _03265 CSW01_03270: CSW01_03270 - hypothetical protein, at 656,640 to 657,029 _03270 CSW01_03275: CSW01_03275 - hybrid sensor histidine kinase/response regulator, at 656,978 to 660,367 _03275 Position (kb) 654 655 656 657Strain fitness (log2 ratio) -1 0 1 2at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.404 kb on - strand, within CSW01_03260at 653.415 kb on + strand, within CSW01_03260at 653.488 kb on - strand, within CSW01_03260at 653.490 kb on + strand, within CSW01_03260at 653.505 kb on + strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.531 kb on + strand, within CSW01_03260at 653.531 kb on + strand, within CSW01_03260at 653.533 kb on + strand, within CSW01_03260at 653.539 kb on + strand, within CSW01_03260at 653.581 kb on - strand, within CSW01_03260at 653.608 kb on + strand, within CSW01_03260at 653.629 kb on + strand, within CSW01_03260at 653.637 kb on - strand, within CSW01_03260at 653.676 kb on + strand, within CSW01_03260at 653.710 kb on + strand, within CSW01_03260at 653.710 kb on + strand, within CSW01_03260at 653.712 kb on - strand, within CSW01_03260at 653.725 kb on + strand, within CSW01_03260at 653.743 kb on - strand, within CSW01_03260at 653.865 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.878 kb on - strand, within CSW01_03260at 653.878 kb on - strand, within CSW01_03260at 653.911 kb on + strand, within CSW01_03260at 653.928 kb on + strand, within CSW01_03260at 653.938 kb on + strand, within CSW01_03260at 653.938 kb on + strand, within CSW01_03260at 653.990 kb on + strand, within CSW01_03260at 653.998 kb on - strand, within CSW01_03260at 653.998 kb on - strand, within CSW01_03260at 654.007 kb on + strand, within CSW01_03260at 654.015 kb on - strand, within CSW01_03260at 654.017 kb on + strand, within CSW01_03260at 654.019 kb on + strand, within CSW01_03260at 654.024 kb on + strand, within CSW01_03260at 654.065 kb on + strand, within CSW01_03260at 654.083 kb on + strand, within CSW01_03260at 654.117 kb on + strand, within CSW01_03260at 654.170 kb on - strandat 654.229 kb on + strandat 654.229 kb on + strandat 654.229 kb on + strandat 654.257 kb on - strandat 654.322 kb on + strandat 654.330 kb on - strandat 654.349 kb on + strandat 654.349 kb on - strandat 654.357 kb on - strandat 654.368 kb on - strandat 654.424 kb on + strandat 654.427 kb on + strandat 654.427 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.509 kb on + strandat 654.517 kb on - strandat 654.517 kb on - strandat 654.517 kb on - strandat 654.517 kb on - strandat 654.574 kb on + strand, within CSW01_03265at 654.662 kb on + strand, within CSW01_03265at 654.700 kb on + strand, within CSW01_03265at 654.727 kb on + strand, within CSW01_03265at 654.744 kb on + strand, within CSW01_03265at 654.752 kb on - strand, within CSW01_03265at 654.805 kb on + strand, within CSW01_03265at 654.805 kb on + strand, within CSW01_03265at 654.805 kb on + strand, within CSW01_03265at 654.813 kb on - strand, within CSW01_03265at 654.813 kb on - strand, within CSW01_03265at 654.813 kb on - strand, within CSW01_03265at 654.864 kb on + strand, within CSW01_03265at 654.864 kb on + strand, within CSW01_03265at 654.876 kb on + strand, within CSW01_03265at 654.897 kb on - strand, within CSW01_03265at 654.899 kb on + strand, within CSW01_03265at 654.907 kb on - strand, within CSW01_03265at 654.915 kb on - strand, within CSW01_03265at 654.927 kb on + strand, within CSW01_03265at 654.935 kb on - strand, within CSW01_03265at 655.020 kb on + strand, within CSW01_03265at 655.028 kb on - strand, within CSW01_03265at 655.092 kb on + strand, within CSW01_03265at 655.156 kb on + strand, within CSW01_03265at 655.164 kb on - strand, within CSW01_03265at 655.188 kb on - strand, within CSW01_03265at 655.339 kb on + strand, within CSW01_03265at 655.351 kb on - strand, within CSW01_03265at 655.406 kb on - strand, within CSW01_03265at 655.412 kb on + strand, within CSW01_03265at 655.451 kb on - strand, within CSW01_03265at 655.451 kb on - strand, within CSW01_03265at 655.451 kb on - strand, within CSW01_03265at 655.451 kb on - strand, within CSW01_03265at 655.462 kb on - strand, within CSW01_03265at 655.464 kb on + strand, within CSW01_03265at 655.472 kb on - strand, within CSW01_03265at 655.497 kb on + strand, within CSW01_03265at 655.497 kb on + strand, within CSW01_03265at 655.505 kb on - strand, within CSW01_03265at 655.558 kb on - strand, within CSW01_03265at 655.569 kb on + strand, within CSW01_03265at 655.739 kb on + strand, within CSW01_03265at 655.742 kb on + strand, within CSW01_03265at 655.742 kb on + strand, within CSW01_03265at 655.764 kb on + strand, within CSW01_03265at 655.765 kb on + strand, within CSW01_03265at 655.772 kb on + strand, within CSW01_03265at 655.772 kb on - strand, within CSW01_03265at 655.773 kb on - strand, within CSW01_03265at 655.773 kb on - strand, within CSW01_03265at 655.952 kb on + strandat 656.001 kb on - strandat 656.043 kb on - strandat 656.055 kb on - strandat 656.132 kb on + strandat 656.140 kb on - strandat 656.160 kb on - strandat 656.160 kb on - strandat 656.162 kb on + strandat 656.162 kb on + strandat 656.170 kb on - strandat 656.195 kb on + strandat 656.642 kb on + strandat 656.648 kb on + strandat 656.656 kb on - strandat 656.656 kb on - strandat 656.656 kb on - strandat 656.685 kb on + strand, within CSW01_03270at 656.693 kb on - strand, within CSW01_03270at 656.733 kb on - strand, within CSW01_03270at 656.742 kb on + strand, within CSW01_03270at 656.890 kb on - strand, within CSW01_03270at 656.890 kb on - strand, within CSW01_03270at 656.902 kb on - strand, within CSW01_03270at 656.902 kb on - strand, within CSW01_03270at 656.980 kb on + strandat 656.987 kb on + strandat 657.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_180MIN_ZN15A
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653,399 - CSW01_03260 0.16 -0.8
653,399 - CSW01_03260 0.16 -0.5
653,399 - CSW01_03260 0.16 -0.1
653,399 - CSW01_03260 0.16 +0.2
653,399 - CSW01_03260 0.16 -0.2
653,399 - CSW01_03260 0.16 -0.5
653,399 - CSW01_03260 0.16 +0.5
653,404 - CSW01_03260 0.17 -0.2
653,415 + CSW01_03260 0.18 +0.9
653,488 - CSW01_03260 0.25 +0.0
653,490 + CSW01_03260 0.25 -0.2
653,505 + CSW01_03260 0.27 -1.0
653,513 - CSW01_03260 0.28 +0.1
653,513 - CSW01_03260 0.28 -0.2
653,513 - CSW01_03260 0.28 -0.8
653,513 - CSW01_03260 0.28 +0.4
653,513 - CSW01_03260 0.28 +0.8
653,531 + CSW01_03260 0.29 -0.1
653,531 + CSW01_03260 0.29 -0.6
653,533 + CSW01_03260 0.30 -0.5
653,539 + CSW01_03260 0.30 -1.2
653,581 - CSW01_03260 0.34 +0.3
653,608 + CSW01_03260 0.37 +0.4
653,629 + CSW01_03260 0.39 +0.0
653,637 - CSW01_03260 0.40 +0.1
653,676 + CSW01_03260 0.44 -0.2
653,710 + CSW01_03260 0.48 +0.0
653,710 + CSW01_03260 0.48 +0.3
653,712 - CSW01_03260 0.48 -0.0
653,725 + CSW01_03260 0.49 +0.6
653,743 - CSW01_03260 0.51 -0.2
653,865 + CSW01_03260 0.63 +0.5
653,870 + CSW01_03260 0.64 -0.3
653,870 + CSW01_03260 0.64 -0.1
653,870 + CSW01_03260 0.64 +0.1
653,870 + CSW01_03260 0.64 -0.3
653,878 - CSW01_03260 0.65 -0.8
653,878 - CSW01_03260 0.65 -0.6
653,911 + CSW01_03260 0.68 -0.4
653,928 + CSW01_03260 0.70 +0.0
653,938 + CSW01_03260 0.71 +0.1
653,938 + CSW01_03260 0.71 +0.2
653,990 + CSW01_03260 0.76 +0.0
653,998 - CSW01_03260 0.77 +0.8
653,998 - CSW01_03260 0.77 -0.3
654,007 + CSW01_03260 0.78 +0.2
654,015 - CSW01_03260 0.78 +0.0
654,017 + CSW01_03260 0.79 +1.0
654,019 + CSW01_03260 0.79 -0.0
654,024 + CSW01_03260 0.79 -0.5
654,065 + CSW01_03260 0.83 +0.6
654,083 + CSW01_03260 0.85 +2.2
654,117 + CSW01_03260 0.89 -0.0
654,170 - +0.3
654,229 + -0.6
654,229 + +0.5
654,229 + +0.2
654,257 - +0.1
654,322 + -0.5
654,330 - -0.0
654,349 + -0.1
654,349 - +0.4
654,357 - +1.0
654,368 - +0.2
654,424 + +1.2
654,427 + +0.2
654,427 + +0.3
654,509 + +0.1
654,509 + +0.4
654,509 + -0.1
654,509 + -0.5
654,509 + +0.4
654,517 - +0.8
654,517 - -0.6
654,517 - +1.3
654,517 - +0.0
654,574 + CSW01_03265 0.11 +0.2
654,662 + CSW01_03265 0.16 -0.1
654,700 + CSW01_03265 0.18 -0.2
654,727 + CSW01_03265 0.20 -0.0
654,744 + CSW01_03265 0.21 -0.5
654,752 - CSW01_03265 0.21 +0.3
654,805 + CSW01_03265 0.24 +0.7
654,805 + CSW01_03265 0.24 +0.7
654,805 + CSW01_03265 0.24 +0.6
654,813 - CSW01_03265 0.25 -1.5
654,813 - CSW01_03265 0.25 +0.1
654,813 - CSW01_03265 0.25 -0.3
654,864 + CSW01_03265 0.28 -0.1
654,864 + CSW01_03265 0.28 -0.5
654,876 + CSW01_03265 0.29 +0.2
654,897 - CSW01_03265 0.30 -0.2
654,899 + CSW01_03265 0.30 -1.1
654,907 - CSW01_03265 0.31 +1.7
654,915 - CSW01_03265 0.31 +0.1
654,927 + CSW01_03265 0.32 -0.1
654,935 - CSW01_03265 0.32 -0.8
655,020 + CSW01_03265 0.37 -0.1
655,028 - CSW01_03265 0.38 -0.7
655,092 + CSW01_03265 0.42 +1.1
655,156 + CSW01_03265 0.45 +0.8
655,164 - CSW01_03265 0.46 +0.7
655,188 - CSW01_03265 0.47 -0.8
655,339 + CSW01_03265 0.56 +1.0
655,351 - CSW01_03265 0.57 -0.3
655,406 - CSW01_03265 0.60 +1.5
655,412 + CSW01_03265 0.61 -0.5
655,451 - CSW01_03265 0.63 -0.3
655,451 - CSW01_03265 0.63 -0.7
655,451 - CSW01_03265 0.63 +0.3
655,451 - CSW01_03265 0.63 -0.3
655,462 - CSW01_03265 0.64 -0.6
655,464 + CSW01_03265 0.64 -0.7
655,472 - CSW01_03265 0.64 -1.3
655,497 + CSW01_03265 0.66 -0.1
655,497 + CSW01_03265 0.66 +0.4
655,505 - CSW01_03265 0.66 +0.3
655,558 - CSW01_03265 0.69 +0.7
655,569 + CSW01_03265 0.70 -0.2
655,739 + CSW01_03265 0.80 -0.3
655,742 + CSW01_03265 0.80 +0.0
655,742 + CSW01_03265 0.80 +0.6
655,764 + CSW01_03265 0.82 -0.2
655,765 + CSW01_03265 0.82 -0.3
655,772 + CSW01_03265 0.82 -0.4
655,772 - CSW01_03265 0.82 -0.3
655,773 - CSW01_03265 0.82 -1.2
655,773 - CSW01_03265 0.82 +0.4
655,952 + -0.0
656,001 - +0.3
656,043 - -0.5
656,055 - +0.2
656,132 + +0.2
656,140 - +1.3
656,160 - -0.4
656,160 - -1.4
656,162 + -0.2
656,162 + +0.2
656,170 - +1.2
656,195 + +1.3
656,642 + -0.0
656,648 + +0.4
656,656 - +0.1
656,656 - +0.7
656,656 - -0.5
656,685 + CSW01_03270 0.12 +0.2
656,693 - CSW01_03270 0.14 -0.0
656,733 - CSW01_03270 0.24 +1.1
656,742 + CSW01_03270 0.26 +0.7
656,890 - CSW01_03270 0.64 +0.9
656,890 - CSW01_03270 0.64 +0.5
656,902 - CSW01_03270 0.67 -0.3
656,902 - CSW01_03270 0.67 +0.2
656,980 + -0.1
656,987 + +0.7
657,066 - -0.2

Or see this region's nucleotide sequence